Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
SOX3P41225 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SOX3P41225 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
SOX3P41225 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SOX3P41225 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SOX3P41225 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.08■□□□□ 0.96
SOX3P41225 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SOX3P41225 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SOX3P41225 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
SOX3P41225 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SOX3P41225 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.96
SOX3P41225 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SOX3P41225 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SOX3P41225 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.07■□□□□ 0.96
SOX3P41225 AL161729.1-201ENST00000604104 1402 ntBASIC21.07■□□□□ 0.96
SOX3P41225 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
SOX3P41225 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.07■□□□□ 0.96
SOX3P41225 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.07■□□□□ 0.96
SOX3P41225 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.07■□□□□ 0.96
SOX3P41225 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.07■□□□□ 0.96
SOX3P41225 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.07■□□□□ 0.96
SOX3P41225 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SOX3P41225 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SOX3P41225 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
SOX3P41225 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.07■□□□□ 0.96
SOX3P41225 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SOX3P41225 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SOX3P41225 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
SOX3P41225 ABCB10P4-201ENST00000566803 2184 ntBASIC21.06■□□□□ 0.96
SOX3P41225 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SOX3P41225 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SOX3P41225 CLDN5-201ENST00000403084 2357 ntBASIC21.06■□□□□ 0.96
SOX3P41225 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
SOX3P41225 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.06■□□□□ 0.96
SOX3P41225 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SOX3P41225 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SOX3P41225 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SOX3P41225 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.06■□□□□ 0.96
SOX3P41225 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.06■□□□□ 0.96
SOX3P41225 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SOX3P41225 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SOX3P41225 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SOX3P41225 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SOX3P41225 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
SOX3P41225 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SOX3P41225 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SOX3P41225 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SOX3P41225 AL512631.2-201ENST00000604634 923 ntBASIC21.05■□□□□ 0.96
SOX3P41225 MIR4466-201ENST00000606121 54 ntBASIC21.05■□□□□ 0.96
SOX3P41225 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SOX3P41225 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SOX3P41225 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.05■□□□□ 0.96
SOX3P41225 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SOX3P41225 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SOX3P41225 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SOX3P41225 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SOX3P41225 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SOX3P41225 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SOX3P41225 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SOX3P41225 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.04■□□□□ 0.96
SOX3P41225 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SOX3P41225 AL136116.3-201ENST00000402907 1138 ntBASIC21.04■□□□□ 0.96
SOX3P41225 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SOX3P41225 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SOX3P41225 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.04■□□□□ 0.96
SOX3P41225 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SOX3P41225 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SOX3P41225 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.04■□□□□ 0.96
SOX3P41225 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SOX3P41225 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SOX3P41225 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.03■□□□□ 0.96
SOX3P41225 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.03■□□□□ 0.96
SOX3P41225 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
SOX3P41225 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SOX3P41225 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SOX3P41225 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SOX3P41225 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.02■□□□□ 0.96
SOX3P41225 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
SOX3P41225 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
SOX3P41225 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
SOX3P41225 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SOX3P41225 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SOX3P41225 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SOX3P41225 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SOX3P41225 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.02■□□□□ 0.96
SOX3P41225 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.02■□□□□ 0.95
SOX3P41225 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SOX3P41225 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SOX3P41225 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SOX3P41225 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SOX3P41225 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SOX3P41225 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SOX3P41225 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21■□□□□ 0.95
SOX3P41225 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21■□□□□ 0.95
SOX3P41225 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
SOX3P41225 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21■□□□□ 0.95
SOX3P41225 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21■□□□□ 0.95
SOX3P41225 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21■□□□□ 0.95
SOX3P41225 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21■□□□□ 0.95
SOX3P41225 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms