Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RORAP35398 AC091305.1-201ENST00000479476 895 ntBASIC21.37■■□□□ 1.01
RORAP35398 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
RORAP35398 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
RORAP35398 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.37■■□□□ 1.01
RORAP35398 AC009086.3-201ENST00000623486 1008 ntBASIC21.37■■□□□ 1.01
RORAP35398 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.37■■□□□ 1.01
RORAP35398 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
RORAP35398 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
RORAP35398 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
RORAP35398 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RORAP35398 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RORAP35398 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.36■■□□□ 1.01
RORAP35398 AC136469.2-201ENST00000623944 1028 ntBASIC21.36■■□□□ 1.01
RORAP35398 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RORAP35398 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
RORAP35398 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
RORAP35398 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RORAP35398 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RORAP35398 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RORAP35398 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.36■■□□□ 1.01
RORAP35398 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RORAP35398 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.35■■□□□ 1.01
RORAP35398 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RORAP35398 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
RORAP35398 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.35■■□□□ 1.01
RORAP35398 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.35■■□□□ 1.01
RORAP35398 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.35■■□□□ 1.01
RORAP35398 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.35■■□□□ 1.01
RORAP35398 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.35■■□□□ 1.01
RORAP35398 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.35■■□□□ 1.01
RORAP35398 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
RORAP35398 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RORAP35398 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.34■■□□□ 1.01
RORAP35398 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
RORAP35398 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
RORAP35398 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.34■■□□□ 1.01
RORAP35398 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RORAP35398 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RORAP35398 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.34■■□□□ 1.01
RORAP35398 AC105265.2-201ENST00000467189 838 ntBASIC21.34■■□□□ 1.01
RORAP35398 MIR3181-201ENST00000578512 73 ntBASIC21.34■■□□□ 1.01
RORAP35398 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
RORAP35398 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RORAP35398 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
RORAP35398 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RORAP35398 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
RORAP35398 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.33■■□□□ 1.01
RORAP35398 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RORAP35398 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.33■■□□□ 1.01
RORAP35398 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.33■■□□□ 1.01
RORAP35398 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.33■■□□□ 1.01
RORAP35398 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.33■■□□□ 1.01
RORAP35398 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.33■■□□□ 1.01
RORAP35398 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.33■■□□□ 1
RORAP35398 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.33■■□□□ 1
RORAP35398 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.32■■□□□ 1
RORAP35398 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RORAP35398 AC027682.1-201ENST00000562846 899 ntBASIC21.32■■□□□ 1
RORAP35398 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.32■■□□□ 1
RORAP35398 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.32■■□□□ 1
RORAP35398 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
RORAP35398 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.32■■□□□ 1
RORAP35398 RASA4CP-201ENST00000424092 1398 ntBASIC21.32■■□□□ 1
RORAP35398 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
RORAP35398 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.32■■□□□ 1
RORAP35398 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RORAP35398 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.32■■□□□ 1
RORAP35398 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
RORAP35398 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
RORAP35398 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RORAP35398 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.31■■□□□ 1
RORAP35398 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.31■■□□□ 1
RORAP35398 CA15P2-201ENST00000611168 834 ntBASIC21.31■■□□□ 1
RORAP35398 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RORAP35398 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.31■■□□□ 1
RORAP35398 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
RORAP35398 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RORAP35398 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.3■■□□□ 1
RORAP35398 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.3■■□□□ 1
RORAP35398 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.3■■□□□ 1
RORAP35398 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.3■■□□□ 1
RORAP35398 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.3■■□□□ 1
RORAP35398 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.3■■□□□ 1
RORAP35398 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.3■■□□□ 1
RORAP35398 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.3■■□□□ 1
RORAP35398 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.3■■□□□ 1
RORAP35398 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.3■■□□□ 1
RORAP35398 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.3■■□□□ 1
RORAP35398 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
RORAP35398 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.29■■□□□ 1
RORAP35398 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RORAP35398 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
RORAP35398 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
RORAP35398 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.29■■□□□ 1
RORAP35398 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.29■■□□□ 1
RORAP35398 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.29■■□□□ 1
RORAP35398 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.29■■□□□ 1
RORAP35398 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
RORAP35398 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms