Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CD74P04233 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CD74P04233 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CD74P04233 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CD74P04233 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC18.95■□□□□ 0.62
CD74P04233 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
CD74P04233 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CD74P04233 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CD74P04233 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC18.95■□□□□ 0.62
CD74P04233 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CD74P04233 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC18.95■□□□□ 0.62
CD74P04233 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CD74P04233 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CD74P04233 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
CD74P04233 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CD74P04233 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CD74P04233 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CD74P04233 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
CD74P04233 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CD74P04233 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
CD74P04233 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC18.94■□□□□ 0.62
CD74P04233 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC18.94■□□□□ 0.62
CD74P04233 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CD74P04233 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
CD74P04233 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CD74P04233 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CD74P04233 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CD74P04233 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC18.93■□□□□ 0.62
CD74P04233 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CD74P04233 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
CD74P04233 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.93■□□□□ 0.62
CD74P04233 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
CD74P04233 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CD74P04233 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.93■□□□□ 0.62
CD74P04233 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CD74P04233 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
CD74P04233 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CD74P04233 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
CD74P04233 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CD74P04233 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC18.92■□□□□ 0.62
CD74P04233 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC18.92■□□□□ 0.62
CD74P04233 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CD74P04233 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.92■□□□□ 0.62
CD74P04233 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CD74P04233 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CD74P04233 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CD74P04233 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CD74P04233 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.91■□□□□ 0.62
CD74P04233 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
CD74P04233 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
CD74P04233 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
CD74P04233 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CD74P04233 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CD74P04233 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.91■□□□□ 0.62
CD74P04233 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CD74P04233 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CD74P04233 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CD74P04233 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CD74P04233 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CD74P04233 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CD74P04233 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC18.9■□□□□ 0.62
CD74P04233 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC18.9■□□□□ 0.62
CD74P04233 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.9■□□□□ 0.62
CD74P04233 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.9■□□□□ 0.62
CD74P04233 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CD74P04233 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CD74P04233 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CD74P04233 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CD74P04233 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC18.9■□□□□ 0.62
CD74P04233 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CD74P04233 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.9■□□□□ 0.62
CD74P04233 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CD74P04233 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CD74P04233 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CD74P04233 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CD74P04233 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CD74P04233 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CD74P04233 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CD74P04233 TPT1-202ENST00000379055 948 ntTSL 2 BASIC18.89■□□□□ 0.61
CD74P04233 AL592295.1-201ENST00000400984 884 ntBASIC18.89■□□□□ 0.61
CD74P04233 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CD74P04233 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CD74P04233 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CD74P04233 SLC25A24-204ENST00000569674 2357 ntBASIC18.89■□□□□ 0.61
CD74P04233 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CD74P04233 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CD74P04233 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CD74P04233 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.88■□□□□ 0.61
CD74P04233 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.88■□□□□ 0.61
CD74P04233 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CD74P04233 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC18.88■□□□□ 0.61
CD74P04233 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CD74P04233 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
CD74P04233 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CD74P04233 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CD74P04233 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CD74P04233 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CD74P04233 AC079630.1-202ENST00000618127 1840 ntBASIC18.88■□□□□ 0.61
CD74P04233 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CD74P04233 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 143.3 ms