Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.52■■□□□ 1.04
SEMA3DO95025 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.52■■□□□ 1.04
SEMA3DO95025 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
SEMA3DO95025 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SEMA3DO95025 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.52■■□□□ 1.03
SEMA3DO95025 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
SEMA3DO95025 DUSP8P3-201ENST00000399571 1760 ntBASIC21.51■■□□□ 1.03
SEMA3DO95025 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SEMA3DO95025 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SEMA3DO95025 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SEMA3DO95025 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.51■■□□□ 1.03
SEMA3DO95025 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SEMA3DO95025 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.51■■□□□ 1.03
SEMA3DO95025 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.51■■□□□ 1.03
SEMA3DO95025 MTDHP2-201ENST00000601468 714 ntBASIC21.51■■□□□ 1.03
SEMA3DO95025 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SEMA3DO95025 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SEMA3DO95025 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SEMA3DO95025 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SEMA3DO95025 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SEMA3DO95025 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
SEMA3DO95025 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SEMA3DO95025 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SEMA3DO95025 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SEMA3DO95025 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SEMA3DO95025 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
SEMA3DO95025 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SEMA3DO95025 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SEMA3DO95025 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SEMA3DO95025 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SEMA3DO95025 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SEMA3DO95025 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
SEMA3DO95025 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
SEMA3DO95025 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.49■■□□□ 1.03
SEMA3DO95025 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.49■■□□□ 1.03
SEMA3DO95025 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SEMA3DO95025 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
SEMA3DO95025 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SEMA3DO95025 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.49■■□□□ 1.03
SEMA3DO95025 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
SEMA3DO95025 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SEMA3DO95025 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SEMA3DO95025 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.49■■□□□ 1.03
SEMA3DO95025 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SEMA3DO95025 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.49■■□□□ 1.03
SEMA3DO95025 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SEMA3DO95025 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
SEMA3DO95025 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.48■■□□□ 1.03
SEMA3DO95025 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SEMA3DO95025 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SEMA3DO95025 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.48■■□□□ 1.03
SEMA3DO95025 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
SEMA3DO95025 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SEMA3DO95025 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SEMA3DO95025 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SEMA3DO95025 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SEMA3DO95025 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SEMA3DO95025 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SEMA3DO95025 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SEMA3DO95025 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
SEMA3DO95025 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
SEMA3DO95025 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SEMA3DO95025 AL035685.1-201ENST00000636663 812 ntBASIC21.47■■□□□ 1.03
SEMA3DO95025 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SEMA3DO95025 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SEMA3DO95025 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SEMA3DO95025 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.46■■□□□ 1.03
SEMA3DO95025 AC079630.1-202ENST00000618127 1840 ntBASIC21.46■■□□□ 1.03
SEMA3DO95025 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
SEMA3DO95025 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SEMA3DO95025 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.46■■□□□ 1.03
SEMA3DO95025 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.46■■□□□ 1.03
SEMA3DO95025 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SEMA3DO95025 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SEMA3DO95025 CLDN5-201ENST00000403084 2357 ntBASIC21.46■■□□□ 1.03
SEMA3DO95025 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SEMA3DO95025 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SEMA3DO95025 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SEMA3DO95025 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
SEMA3DO95025 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SEMA3DO95025 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SEMA3DO95025 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SEMA3DO95025 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.45■■□□□ 1.03
SEMA3DO95025 AC010997.5-201ENST00000609182 354 ntBASIC21.45■■□□□ 1.02
SEMA3DO95025 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SEMA3DO95025 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SEMA3DO95025 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SEMA3DO95025 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.44■■□□□ 1.02
SEMA3DO95025 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.44■■□□□ 1.02
SEMA3DO95025 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.44■■□□□ 1.02
SEMA3DO95025 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SEMA3DO95025 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.44■■□□□ 1.02
SEMA3DO95025 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.44■■□□□ 1.02
SEMA3DO95025 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.44■■□□□ 1.02
SEMA3DO95025 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.44■■□□□ 1.02
SEMA3DO95025 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SEMA3DO95025 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SEMA3DO95025 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.43■■□□□ 1.02
SEMA3DO95025 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SEMA3DO95025 TSPY9P-201ENST00000440215 945 ntBASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms