Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LMX1BO60663 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LMX1BO60663 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC19.74■□□□□ 0.75
LMX1BO60663 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC19.74■□□□□ 0.75
LMX1BO60663 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.74■□□□□ 0.75
LMX1BO60663 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC19.74■□□□□ 0.75
LMX1BO60663 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
LMX1BO60663 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
LMX1BO60663 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
LMX1BO60663 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.73■□□□□ 0.75
LMX1BO60663 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
LMX1BO60663 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1BO60663 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
LMX1BO60663 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
LMX1BO60663 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1BO60663 AC120024.1-201ENST00000562672 995 ntBASIC19.73■□□□□ 0.75
LMX1BO60663 AC011551.1-201ENST00000614101 683 ntBASIC19.73■□□□□ 0.75
LMX1BO60663 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.73■□□□□ 0.75
LMX1BO60663 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1BO60663 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1BO60663 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1BO60663 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1BO60663 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1BO60663 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
LMX1BO60663 AC021242.3-201ENST00000607598 1377 ntBASIC19.72■□□□□ 0.75
LMX1BO60663 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
LMX1BO60663 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LMX1BO60663 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.72■□□□□ 0.75
LMX1BO60663 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC19.72■□□□□ 0.75
LMX1BO60663 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.72■□□□□ 0.75
LMX1BO60663 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LMX1BO60663 AC079834.2-201ENST00000609776 1949 ntBASIC19.72■□□□□ 0.75
LMX1BO60663 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LMX1BO60663 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LMX1BO60663 C1orf229-201ENST00000623686 2258 ntBASIC19.72■□□□□ 0.75
LMX1BO60663 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.71■□□□□ 0.75
LMX1BO60663 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LMX1BO60663 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LMX1BO60663 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LMX1BO60663 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LMX1BO60663 MIR638-201ENST00000385237 100 ntBASIC19.71■□□□□ 0.75
LMX1BO60663 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
LMX1BO60663 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LMX1BO60663 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1BO60663 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1BO60663 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1BO60663 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1BO60663 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.7■□□□□ 0.74
LMX1BO60663 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1BO60663 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.7■□□□□ 0.74
LMX1BO60663 AL139246.5-201ENST00000606645 996 ntBASIC19.7■□□□□ 0.74
LMX1BO60663 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.7■□□□□ 0.74
LMX1BO60663 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.7■□□□□ 0.74
LMX1BO60663 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.7■□□□□ 0.74
LMX1BO60663 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1BO60663 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.7■□□□□ 0.74
LMX1BO60663 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1BO60663 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1BO60663 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
LMX1BO60663 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LMX1BO60663 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LMX1BO60663 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
LMX1BO60663 ALDH1A3-203ENST00000557963 1670 ntBASIC19.69■□□□□ 0.74
LMX1BO60663 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LMX1BO60663 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
LMX1BO60663 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
LMX1BO60663 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
LMX1BO60663 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.69■□□□□ 0.74
LMX1BO60663 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LMX1BO60663 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC19.69■□□□□ 0.74
LMX1BO60663 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC19.69■□□□□ 0.74
LMX1BO60663 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.69■□□□□ 0.74
LMX1BO60663 AC092028.1-203ENST00000608262 953 ntBASIC19.69■□□□□ 0.74
LMX1BO60663 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.69■□□□□ 0.74
LMX1BO60663 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LMX1BO60663 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1BO60663 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1BO60663 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1BO60663 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.68■□□□□ 0.74
LMX1BO60663 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1BO60663 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1BO60663 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.68■□□□□ 0.74
LMX1BO60663 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1BO60663 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.68■□□□□ 0.74
LMX1BO60663 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
LMX1BO60663 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.68■□□□□ 0.74
LMX1BO60663 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1BO60663 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1BO60663 AC233723.2-201ENST00000623798 2106 ntBASIC19.67■□□□□ 0.74
LMX1BO60663 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.67■□□□□ 0.74
LMX1BO60663 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.67■□□□□ 0.74
LMX1BO60663 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1BO60663 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1BO60663 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.67■□□□□ 0.74
LMX1BO60663 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.67■□□□□ 0.74
LMX1BO60663 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.67■□□□□ 0.74
LMX1BO60663 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1BO60663 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1BO60663 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1BO60663 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms