Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SOX1O00570 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC24.4■■□□□ 1.5
SOX1O00570 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
SOX1O00570 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SOX1O00570 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SOX1O00570 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SOX1O00570 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
SOX1O00570 KRT18P29-201ENST00000397031 1267 ntBASIC24.39■■□□□ 1.49
SOX1O00570 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
SOX1O00570 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.49
SOX1O00570 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.49
SOX1O00570 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC24.39■■□□□ 1.49
SOX1O00570 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SOX1O00570 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SOX1O00570 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
SOX1O00570 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC24.38■■□□□ 1.49
SOX1O00570 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SOX1O00570 SPI1-203ENST00000533030 661 ntTSL 2 BASIC24.38■■□□□ 1.49
SOX1O00570 SMUG1P1-201ENST00000590640 811 ntBASIC24.38■■□□□ 1.49
SOX1O00570 MDK-213ENST00000617138 635 ntTSL 2 BASIC24.38■■□□□ 1.49
SOX1O00570 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC24.38■■□□□ 1.49
SOX1O00570 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SOX1O00570 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC24.38■■□□□ 1.49
SOX1O00570 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
SOX1O00570 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC24.38■■□□□ 1.49
SOX1O00570 LINC01003-201ENST00000564834 1764 ntBASIC24.37■■□□□ 1.49
SOX1O00570 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC24.37■■□□□ 1.49
SOX1O00570 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SOX1O00570 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC24.37■■□□□ 1.49
SOX1O00570 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC24.37■■□□□ 1.49
SOX1O00570 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
SOX1O00570 AL596275.1-201ENST00000423464 877 ntBASIC24.37■■□□□ 1.49
SOX1O00570 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
SOX1O00570 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC24.37■■□□□ 1.49
SOX1O00570 AC105233.4-201ENST00000642045 216 ntBASIC24.37■■□□□ 1.49
SOX1O00570 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
SOX1O00570 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC24.36■■□□□ 1.49
SOX1O00570 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
SOX1O00570 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
SOX1O00570 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
SOX1O00570 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
SOX1O00570 RGMA-211ENST00000557420 989 ntTSL 3 BASIC24.36■■□□□ 1.49
SOX1O00570 DUX4L4-201ENST00000566884 1269 ntBASIC24.36■■□□□ 1.49
SOX1O00570 AC010525.1-201ENST00000585559 441 ntBASIC24.36■■□□□ 1.49
SOX1O00570 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC24.36■■□□□ 1.49
SOX1O00570 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
SOX1O00570 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC24.35■■□□□ 1.49
SOX1O00570 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC24.35■■□□□ 1.49
SOX1O00570 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC24.35■■□□□ 1.49
SOX1O00570 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
SOX1O00570 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SOX1O00570 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
SOX1O00570 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SOX1O00570 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
SOX1O00570 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC24.34■■□□□ 1.49
SOX1O00570 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC24.34■■□□□ 1.49
SOX1O00570 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
SOX1O00570 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
SOX1O00570 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC24.34■■□□□ 1.49
SOX1O00570 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
SOX1O00570 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC24.34■■□□□ 1.49
SOX1O00570 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC24.34■■□□□ 1.49
SOX1O00570 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
SOX1O00570 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
SOX1O00570 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
SOX1O00570 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
SOX1O00570 METTL15-202ENST00000403099 795 ntTSL 5 BASIC24.33■■□□□ 1.49
SOX1O00570 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SOX1O00570 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC24.33■■□□□ 1.49
SOX1O00570 MAZ-216ENST00000616501 991 ntTSL 5 BASIC24.33■■□□□ 1.49
SOX1O00570 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SOX1O00570 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC24.33■■□□□ 1.48
SOX1O00570 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.48
SOX1O00570 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
SOX1O00570 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
SOX1O00570 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
SOX1O00570 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC24.32■■□□□ 1.48
SOX1O00570 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SOX1O00570 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
SOX1O00570 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
SOX1O00570 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC24.31■■□□□ 1.48
SOX1O00570 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
SOX1O00570 STK32C-205ENST00000456004 607 ntTSL 2 BASIC24.31■■□□□ 1.48
SOX1O00570 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SOX1O00570 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
SOX1O00570 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SOX1O00570 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SOX1O00570 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC24.31■■□□□ 1.48
SOX1O00570 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC24.31■■□□□ 1.48
SOX1O00570 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
SOX1O00570 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
SOX1O00570 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC24.3■■□□□ 1.48
SOX1O00570 KRT19P1-201ENST00000405746 1186 ntBASIC24.3■■□□□ 1.48
SOX1O00570 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC24.3■■□□□ 1.48
SOX1O00570 PFKL-212ENST00000628044 129 ntTSL 3 BASIC24.3■■□□□ 1.48
SOX1O00570 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
SOX1O00570 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
SOX1O00570 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
SOX1O00570 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
SOX1O00570 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms