Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 pRNA.13-201ENST00000619112 90 ntBASIC20.55■□□□□ 0.88
COL6A6A6NMZ7 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A6A6NMZ7 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A6A6NMZ7 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.55■□□□□ 0.88
COL6A6A6NMZ7 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A6A6NMZ7 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.55■□□□□ 0.88
COL6A6A6NMZ7 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A6A6NMZ7 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.55■□□□□ 0.88
COL6A6A6NMZ7 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
COL6A6A6NMZ7 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.55■□□□□ 0.88
COL6A6A6NMZ7 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.55■□□□□ 0.88
COL6A6A6NMZ7 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
COL6A6A6NMZ7 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A6A6NMZ7 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A6A6NMZ7 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.54■□□□□ 0.88
COL6A6A6NMZ7 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.54■□□□□ 0.88
COL6A6A6NMZ7 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A6A6NMZ7 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A6A6NMZ7 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.53■□□□□ 0.88
COL6A6A6NMZ7 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A6A6NMZ7 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A6A6NMZ7 LINC02228-203ENST00000641970 1355 ntBASIC20.53■□□□□ 0.88
COL6A6A6NMZ7 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A6A6NMZ7 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A6A6NMZ7 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.53■□□□□ 0.88
COL6A6A6NMZ7 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A6A6NMZ7 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.53■□□□□ 0.88
COL6A6A6NMZ7 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A6A6NMZ7 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A6A6NMZ7 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A6A6NMZ7 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A6A6NMZ7 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.52■□□□□ 0.88
COL6A6A6NMZ7 KRT19P1-201ENST00000405746 1186 ntBASIC20.52■□□□□ 0.88
COL6A6A6NMZ7 KRT18P11-201ENST00000435214 1283 ntBASIC20.52■□□□□ 0.88
COL6A6A6NMZ7 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.52■□□□□ 0.88
COL6A6A6NMZ7 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A6A6NMZ7 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A6A6NMZ7 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A6A6NMZ7 AC087239.1-201ENST00000622671 572 ntBASIC20.52■□□□□ 0.88
COL6A6A6NMZ7 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
COL6A6A6NMZ7 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A6A6NMZ7 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL6A6A6NMZ7 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
COL6A6A6NMZ7 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.51■□□□□ 0.87
COL6A6A6NMZ7 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.51■□□□□ 0.87
COL6A6A6NMZ7 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.51■□□□□ 0.87
COL6A6A6NMZ7 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.51■□□□□ 0.87
COL6A6A6NMZ7 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A6A6NMZ7 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
COL6A6A6NMZ7 AC004854.2-201ENST00000608450 1441 ntBASIC20.51■□□□□ 0.87
COL6A6A6NMZ7 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A6A6NMZ7 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A6A6NMZ7 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A6A6NMZ7 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.51■□□□□ 0.87
COL6A6A6NMZ7 TPRG1LP1-201ENST00000598702 760 ntBASIC20.51■□□□□ 0.87
COL6A6A6NMZ7 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC20.51■□□□□ 0.87
COL6A6A6NMZ7 ST7-205ENST00000393446 2114 ntTSL 5 BASIC20.51■□□□□ 0.87
COL6A6A6NMZ7 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A6A6NMZ7 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A6A6NMZ7 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A6A6NMZ7 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.5■□□□□ 0.87
COL6A6A6NMZ7 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.5■□□□□ 0.87
COL6A6A6NMZ7 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A6A6NMZ7 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A6A6NMZ7 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.5■□□□□ 0.87
COL6A6A6NMZ7 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.5■□□□□ 0.87
COL6A6A6NMZ7 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
COL6A6A6NMZ7 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.49■□□□□ 0.87
COL6A6A6NMZ7 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.49■□□□□ 0.87
COL6A6A6NMZ7 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
COL6A6A6NMZ7 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
COL6A6A6NMZ7 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.49■□□□□ 0.87
COL6A6A6NMZ7 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL6A6A6NMZ7 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.49■□□□□ 0.87
COL6A6A6NMZ7 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
COL6A6A6NMZ7 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL6A6A6NMZ7 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL6A6A6NMZ7 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC20.48■□□□□ 0.87
COL6A6A6NMZ7 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
COL6A6A6NMZ7 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.48■□□□□ 0.87
COL6A6A6NMZ7 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.48■□□□□ 0.87
COL6A6A6NMZ7 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
COL6A6A6NMZ7 AC073210.2-201ENST00000430369 194 ntBASIC20.47■□□□□ 0.87
COL6A6A6NMZ7 AP004607.4-201ENST00000530158 1459 ntBASIC20.47■□□□□ 0.87
COL6A6A6NMZ7 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC20.47■□□□□ 0.87
COL6A6A6NMZ7 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL6A6A6NMZ7 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL6A6A6NMZ7 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.47■□□□□ 0.87
COL6A6A6NMZ7 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.47■□□□□ 0.87
COL6A6A6NMZ7 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
COL6A6A6NMZ7 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.47■□□□□ 0.87
COL6A6A6NMZ7 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL6A6A6NMZ7 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.47■□□□□ 0.87
COL6A6A6NMZ7 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.47■□□□□ 0.87
COL6A6A6NMZ7 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.47■□□□□ 0.87
COL6A6A6NMZ7 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL6A6A6NMZ7 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.46■□□□□ 0.87
COL6A6A6NMZ7 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL6A6A6NMZ7 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL6A6A6NMZ7 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms