Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC30.24■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC30.23■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC30.23■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC30.23■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC30.23■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC30.23■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 CLTA-210ENST00000540080 989 ntTSL 2 BASIC30.23■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC30.23■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC30.23■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC30.23■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC30.23■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC30.23■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC30.22■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 ESRRAP2-201ENST00000418437 1549 ntBASIC30.22■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC30.22■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC30.22■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC30.22■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC30.22■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 AC137630.3-201ENST00000607245 391 ntBASIC30.22■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 NFE2L3P1-201ENST00000588207 1959 ntBASIC30.22■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC30.22■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC30.22■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC30.21■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC30.21■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 TK2-202ENST00000417693 1046 ntTSL 2 BASIC30.21■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 RPP21-222ENST00000433076 577 ntTSL 2 BASIC30.21■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 AC090192.1-201ENST00000517740 490 ntBASIC30.21■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 SRR-208ENST00000576848 588 ntTSL 4 BASIC30.21■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 USF2-207ENST00000595068 1612 ntTSL 5 BASIC30.21■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 ALDH1A3-203ENST00000557963 1670 ntBASIC30.2■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC30.2■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 SNX5-217ENST00000606557 1087 ntBASIC30.2■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC30.2■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.43
SENP3-EIF4A1A0A087X0R7 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC30.2■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC30.19■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC30.19■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC30.19■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC30.19■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC30.19■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC30.19■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC30.18■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC30.18■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 TSPY9P-201ENST00000440215 945 ntBASIC30.18■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 TSPY11P-201ENST00000442607 1045 ntBASIC30.18■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC30.18■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 AC021242.3-201ENST00000607598 1377 ntBASIC30.17■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC30.17■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC30.17■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC30.17■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 ANOS2P-203ENST00000472227 1816 ntBASIC30.17■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC30.17■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC30.16■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 AC004448.1-201ENST00000458332 883 ntBASIC30.16■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC30.16■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC30.16■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC30.15■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC30.15■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC30.15■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC30.15■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC30.15■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC30.14■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC30.14■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 BX664725.1-201ENST00000438252 379 ntBASIC30.14■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC30.14■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
SENP3-EIF4A1A0A087X0R7 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC30.14■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC30.13■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms