Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC012044.1-201ENST00000603431 297 ntBASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 AC079336.7-201ENST00000623428 1078 ntBASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 RPL13AP3-202ENST00000494676 1473 ntBASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 LINC00115-201ENST00000473798 1317 ntBASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 DGCR9-201ENST00000609630 2415 ntBASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 HMGA1P1-201ENST00000415560 1062 ntBASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 AC106872.11-201ENST00000605838 421 ntBASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 AC006453.1-201ENST00000636037 1257 ntBASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
TRIM39Q9HCM9 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC14.08□□□□□ -0.15
TRIM39Q9HCM9 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
TRIM39Q9HCM9 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
TRIM39Q9HCM9 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
TRIM39Q9HCM9 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
TRIM39Q9HCM9 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
TRIM39Q9HCM9 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.15
TRIM39Q9HCM9 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
TRIM39Q9HCM9 KRT8P31-201ENST00000504812 1408 ntBASIC14.08□□□□□ -0.15
TRIM39Q9HCM9 TBC1D3J-201ENST00000620719 1426 ntBASIC14.08□□□□□ -0.15
TRIM39Q9HCM9 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 CICP16-201ENST00000502609 2813 ntBASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 BAX-205ENST00000391871 687 ntTSL 5 BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 OR8T1P-201ENST00000421347 918 ntBASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 NAGK-204ENST00000443872 878 ntTSL 3 BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms