Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CHD8Q9HCK8 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
CHD8Q9HCK8 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CHD8Q9HCK8 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC12.73□□□□□ -0.37
CHD8Q9HCK8 TRAF4-202ENST00000262396 683 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CHD8Q9HCK8 FCER1A-201ENST00000368114 765 ntTSL 3 BASIC12.73□□□□□ -0.37
CHD8Q9HCK8 LDHAL6FP-201ENST00000405916 1082 ntBASIC12.73□□□□□ -0.37
CHD8Q9HCK8 AC007322.2-201ENST00000414540 605 ntBASIC12.73□□□□□ -0.37
CHD8Q9HCK8 AC108082.1-201ENST00000510857 331 ntBASIC12.73□□□□□ -0.37
CHD8Q9HCK8 AC044839.1-201ENST00000532307 541 ntTSL 5 BASIC12.73□□□□□ -0.37
CHD8Q9HCK8 MIA-RAB4B-201ENST00000600729 1229 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
CHD8Q9HCK8 AL669831.3-208ENST00000634337 891 ntTSL 5 BASIC12.73□□□□□ -0.37
CHD8Q9HCK8 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 LINC02486-201ENST00000604157 3000 ntBASIC12.72□□□□□ -0.37
CHD8Q9HCK8 SMUG1-220ENST00000513838 2119 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 FBXO39-201ENST00000321535 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 BTN2A2-204ENST00000432533 1570 ntTSL 2 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 USP39-220ENST00000613444 2161 ntTSL 2 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 ZNF451-205ENST00000370710 375 ntTSL 2 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 AP000346.1-201ENST00000390329 1087 ntTSL 5 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 AC022634.2-201ENST00000521504 382 ntTSL 3 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 FAR1-IT1-201ENST00000525233 368 ntTSL 3 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 AP003392.3-201ENST00000531886 667 ntTSL 5 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 AC104759.1-201ENST00000559109 939 ntBASIC12.72□□□□□ -0.37
CHD8Q9HCK8 SNORA50D-202ENST00000627561 132 ntBASIC12.72□□□□□ -0.37
CHD8Q9HCK8 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 VOPP1-204ENST00000418904 1317 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 OR52L1-201ENST00000332249 1094 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 UGT1A6-202ENST00000373424 1128 ntTSL 2 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 MARCKSL1P2-201ENST00000401037 976 ntBASIC12.72□□□□□ -0.37
CHD8Q9HCK8 SWI5-204ENST00000419867 1048 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 AKR1B1P4-201ENST00000426552 922 ntBASIC12.72□□□□□ -0.37
CHD8Q9HCK8 AC092100.1-201ENST00000435148 702 ntTSL 3 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 CSRP1-219ENST00000533432 1149 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 CALM3-206ENST00000594523 540 ntTSL 4 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 AC108102.1-201ENST00000606528 548 ntTSL 3 BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 AC080038.2-201ENST00000617734 423 ntBASIC12.72□□□□□ -0.37
CHD8Q9HCK8 AC112702.1-201ENST00000623712 366 ntBASIC12.72□□□□□ -0.37
CHD8Q9HCK8 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHD8Q9HCK8 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 ZNF485-202ENST00000374435 2052 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 AC004554.2-201ENST00000634846 1893 ntTSL 5 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 SLC26A5-203ENST00000354356 2686 ntAPPRIS ALT1 TSL 5 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 GOLGA8G-203ENST00000525590 2009 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 GOLGA8F-202ENST00000532622 2009 ntAPPRIS P5 TSL 5 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 LINC01115-202ENST00000621134 1519 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 ZNF793-205ENST00000587143 1488 ntAPPRIS P1 TSL 4 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 NTF3-201ENST00000331010 1028 ntAPPRIS P3 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 CEP112-202ENST00000392769 3517 ntAPPRIS P4 TSL 5 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 TULP3P1-202ENST00000453253 1291 ntBASIC12.71□□□□□ -0.37
CHD8Q9HCK8 ALG1L14P-201ENST00000514230 434 ntBASIC12.71□□□□□ -0.37
CHD8Q9HCK8 LINC02163-201ENST00000514769 574 ntTSL 4 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 CHIAP2-204ENST00000532686 1449 ntBASIC12.71□□□□□ -0.37
CHD8Q9HCK8 ADIPOR1P2-201ENST00000554199 820 ntBASIC12.71□□□□□ -0.37
CHD8Q9HCK8 AC005586.2-201ENST00000563946 837 ntBASIC12.71□□□□□ -0.37
CHD8Q9HCK8 MIR4526-201ENST00000583168 87 ntBASIC12.71□□□□□ -0.37
CHD8Q9HCK8 DUSP22-206ENST00000603453 804 ntTSL 4 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 MX1-218ENST00000619682 1980 ntTSL 5 BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHD8Q9HCK8 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CHD8Q9HCK8 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CHD8Q9HCK8 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
CHD8Q9HCK8 AL590399.1-202ENST00000429818 1480 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CHD8Q9HCK8 AL512625.1-202ENST00000476224 1480 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CHD8Q9HCK8 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms