Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 KRT18P44-201ENST00000416086 1285 ntBASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 RN7SL672P-201ENST00000474091 317 ntBASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 FAM86JP-202ENST00000484500 988 ntBASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 AC233724.9-201ENST00000511694 407 ntBASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 GLIPR1L2-203ENST00000547164 509 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC88AQ3V6T2 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC88AQ3V6T2 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC88AQ3V6T2 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC88AQ3V6T2 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
CCDC88AQ3V6T2 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC88AQ3V6T2 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC88AQ3V6T2 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 LINC00449-201ENST00000366259 872 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 REG3G-202ENST00000393897 856 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 AL359182.1-201ENST00000435915 469 ntTSL 3 BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 AC022447.5-201ENST00000504817 392 ntBASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 TMA16-204ENST00000508268 608 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 BIRC5-211ENST00000592734 386 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 RAB11B-205ENST00000601897 577 ntTSL 3 BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 TKT-201ENST00000296289 1931 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC88AQ3V6T2 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 OR2W3-201ENST00000360358 945 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 SNU13-204ENST00000402458 462 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 OR7E155P-201ENST00000412208 1014 ntBASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 OR4A49P-201ENST00000527050 632 ntBASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 TPST2P1-201ENST00000564073 1102 ntBASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 AC008622.3-201ENST00000621170 600 ntBASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 AL590556.2-202ENST00000636906 844 ntBASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 BX088651.3-201ENST00000418155 352 ntBASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 RPL18AP15-201ENST00000430258 517 ntBASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 RN7SL33P-201ENST00000462543 342 ntBASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 CETN3-205ENST00000522842 664 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms