Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 COPE-202ENST00000349893 948 ntTSL 2 BASIC13.71□□□□□ -0.21
FOXA1P55317 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA1P55317 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
FOXA1P55317 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
FOXA1P55317 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA1P55317 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC13.71□□□□□ -0.21
FOXA1P55317 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC13.71□□□□□ -0.21
FOXA1P55317 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA1P55317 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
FOXA1P55317 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC13.71□□□□□ -0.21
FOXA1P55317 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC13.71□□□□□ -0.21
FOXA1P55317 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC13.71□□□□□ -0.21
FOXA1P55317 CSF2RBP1-201ENST00000447905 391 ntBASIC13.71□□□□□ -0.21
FOXA1P55317 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC13.71□□□□□ -0.21
FOXA1P55317 RNMTL1P1-201ENST00000454103 560 ntBASIC13.71□□□□□ -0.21
FOXA1P55317 RPL18P13-201ENST00000478088 569 ntBASIC13.71□□□□□ -0.21
FOXA1P55317 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC13.71□□□□□ -0.21
FOXA1P55317 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC13.71□□□□□ -0.21
FOXA1P55317 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC13.71□□□□□ -0.21
FOXA1P55317 CR383656.12-201ENST00000549567 513 ntBASIC13.71□□□□□ -0.21
FOXA1P55317 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA1P55317 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC13.71□□□□□ -0.21
FOXA1P55317 AC008805.1-201ENST00000590892 364 ntBASIC13.71□□□□□ -0.21
FOXA1P55317 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.71□□□□□ -0.21
FOXA1P55317 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC13.71□□□□□ -0.21
FOXA1P55317 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
FOXA1P55317 AL162274.1-201ENST00000617191 1098 ntBASIC13.71□□□□□ -0.21
FOXA1P55317 PCBP2-OT1-201ENST00000634357 590 ntBASIC13.71□□□□□ -0.21
FOXA1P55317 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC13.71□□□□□ -0.21
FOXA1P55317 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA1P55317 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC13.71□□□□□ -0.21
FOXA1P55317 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC13.71□□□□□ -0.21
FOXA1P55317 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC13.71□□□□□ -0.21
FOXA1P55317 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA1P55317 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA1P55317 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA1P55317 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA1P55317 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA1P55317 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA1P55317 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA1P55317 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA1P55317 AC007666.1-201ENST00000443935 1838 ntTSL 5 BASIC13.71□□□□□ -0.22
FOXA1P55317 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC13.71□□□□□ -0.22
FOXA1P55317 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC13.71□□□□□ -0.22
FOXA1P55317 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC13.71□□□□□ -0.22
FOXA1P55317 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC13.71□□□□□ -0.22
FOXA1P55317 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.71□□□□□ -0.22
FOXA1P55317 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC13.71□□□□□ -0.22
FOXA1P55317 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA1P55317 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA1P55317 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA1P55317 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA1P55317 AC008620.2-201ENST00000510294 1569 ntBASIC13.71□□□□□ -0.22
FOXA1P55317 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA1P55317 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.22
FOXA1P55317 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
FOXA1P55317 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC13.7□□□□□ -0.22
FOXA1P55317 AC004899.2-201ENST00000622993 3860 ntBASIC13.7□□□□□ -0.22
FOXA1P55317 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
FOXA1P55317 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
FOXA1P55317 AP003969.2-201ENST00000623739 2275 ntBASIC13.7□□□□□ -0.22
FOXA1P55317 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
FOXA1P55317 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
FOXA1P55317 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC13.7□□□□□ -0.22
FOXA1P55317 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC13.7□□□□□ -0.22
FOXA1P55317 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC13.7□□□□□ -0.22
FOXA1P55317 AL035633.1-201ENST00000406139 838 ntBASIC13.7□□□□□ -0.22
FOXA1P55317 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC13.7□□□□□ -0.22
FOXA1P55317 U91328.1-201ENST00000437528 223 ntBASIC13.7□□□□□ -0.22
FOXA1P55317 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 HSPB1P2-201ENST00000448722 546 ntBASIC13.7□□□□□ -0.22
FOXA1P55317 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC13.7□□□□□ -0.22
FOXA1P55317 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 AC104989.1-201ENST00000519711 778 ntBASIC13.7□□□□□ -0.22
FOXA1P55317 RAB43P1-201ENST00000561790 589 ntBASIC13.7□□□□□ -0.22
FOXA1P55317 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC13.7□□□□□ -0.22
FOXA1P55317 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC13.7□□□□□ -0.22
FOXA1P55317 AC005324.6-201ENST00000587972 613 ntBASIC13.7□□□□□ -0.22
FOXA1P55317 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC13.7□□□□□ -0.22
FOXA1P55317 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC13.7□□□□□ -0.22
FOXA1P55317 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 MTMR11-201ENST00000369140 2324 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
FOXA1P55317 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC13.7□□□□□ -0.22
FOXA1P55317 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC13.7□□□□□ -0.22
FOXA1P55317 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
FOXA1P55317 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 PGM3-201ENST00000283977 2219 ntTSL 5 BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms