Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 DFFA-202ENST00000377038 6032 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 ARHGEF33-201ENST00000398800 4300 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
SOX2P48431 EML1-203ENST00000334192 4064 ntTSL 5 BASIC12.54□□□□□ -0.4
SOX2P48431 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC12.54□□□□□ -0.4
SOX2P48431 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC12.54□□□□□ -0.4
SOX2P48431 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
SOX2P48431 SLFNL1-AS1-201ENST00000626479 4800 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC12.54□□□□□ -0.4
SOX2P48431 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
SOX2P48431 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC12.54□□□□□ -0.4
SOX2P48431 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
SOX2P48431 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC12.54□□□□□ -0.4
SOX2P48431 BRD1-201ENST00000216267 4614 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 NFATC2-201ENST00000371564 7525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
SOX2P48431 PCDHB9-201ENST00000316105 4415 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
SOX2P48431 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
SOX2P48431 HTR2C-201ENST00000276198 4751 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 ABCA3-202ENST00000382381 6446 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
SOX2P48431 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC12.53□□□□□ -0.4
SOX2P48431 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 PDIA3P1-201ENST00000471856 1510 ntBASIC12.53□□□□□ -0.4
SOX2P48431 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC12.53□□□□□ -0.4
SOX2P48431 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
SOX2P48431 EPN2-202ENST00000347697 4664 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
SOX2P48431 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC12.53□□□□□ -0.4
SOX2P48431 NUMA1-233ENST00000616538 6998 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
SOX2P48431 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 SCAF4-201ENST00000286835 4193 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 MPV17-205ENST00000402310 906 ntTSL 5 BASIC12.53□□□□□ -0.4
SOX2P48431 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC12.53□□□□□ -0.4
SOX2P48431 RPL28-203ENST00000428193 573 ntTSL 2 BASIC12.53□□□□□ -0.4
SOX2P48431 RPL28-204ENST00000431533 590 ntTSL 2 BASIC12.53□□□□□ -0.4
SOX2P48431 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC12.53□□□□□ -0.4
SOX2P48431 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC12.53□□□□□ -0.4
SOX2P48431 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC12.53□□□□□ -0.4
SOX2P48431 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC12.53□□□□□ -0.4
SOX2P48431 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
SOX2P48431 RPL28-207ENST00000558815 616 ntTSL 2 BASIC12.53□□□□□ -0.4
SOX2P48431 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC12.53□□□□□ -0.4
SOX2P48431 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
SOX2P48431 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
SOX2P48431 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC12.53□□□□□ -0.4
SOX2P48431 RTL10-202ENST00000405640 6785 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 HPSE-201ENST00000311412 4615 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC12.53□□□□□ -0.4
SOX2P48431 ITGA5-201ENST00000293379 4444 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
SOX2P48431 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
SOX2P48431 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
SOX2P48431 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 AC102953.2-201ENST00000609755 3026 ntBASIC12.53□□□□□ -0.4
SOX2P48431 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC12.53□□□□□ -0.4
SOX2P48431 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
SOX2P48431 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SOX2P48431 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC12.52□□□□□ -0.4
SOX2P48431 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC12.52□□□□□ -0.4
SOX2P48431 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SOX2P48431 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SOX2P48431 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
SOX2P48431 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
SOX2P48431 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
SOX2P48431 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SOX2P48431 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC12.52□□□□□ -0.4
SOX2P48431 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC12.52□□□□□ -0.4
SOX2P48431 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
SOX2P48431 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC12.52□□□□□ -0.41
SOX2P48431 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC12.52□□□□□ -0.41
SOX2P48431 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SOX2P48431 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
SOX2P48431 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SOX2P48431 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
SOX2P48431 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SOX2P48431 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC12.52□□□□□ -0.41
SOX2P48431 AL355864.2-201ENST00000447420 863 ntBASIC12.52□□□□□ -0.41
SOX2P48431 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC12.52□□□□□ -0.41
SOX2P48431 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC12.52□□□□□ -0.41
SOX2P48431 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC12.52□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms