Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC16.14■□□□□ 0.17
ERCC4Q92889 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC16.14■□□□□ 0.17
ERCC4Q92889 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
ERCC4Q92889 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC16.14■□□□□ 0.17
ERCC4Q92889 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.14■□□□□ 0.17
ERCC4Q92889 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
ERCC4Q92889 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
ERCC4Q92889 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC16.14■□□□□ 0.17
ERCC4Q92889 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
ERCC4Q92889 MARK2P9-201ENST00000430958 1727 ntBASIC16.14■□□□□ 0.17
ERCC4Q92889 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
ERCC4Q92889 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC16.13■□□□□ 0.17
ERCC4Q92889 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC16.13■□□□□ 0.17
ERCC4Q92889 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC16.13■□□□□ 0.17
ERCC4Q92889 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC16.13■□□□□ 0.17
ERCC4Q92889 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
ERCC4Q92889 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC16.13■□□□□ 0.17
ERCC4Q92889 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC16.13■□□□□ 0.17
ERCC4Q92889 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
ERCC4Q92889 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC16.13■□□□□ 0.17
ERCC4Q92889 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC16.13■□□□□ 0.17
ERCC4Q92889 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC16.13■□□□□ 0.17
ERCC4Q92889 USB1-202ENST00000423271 1217 ntTSL 2 BASIC16.13■□□□□ 0.17
ERCC4Q92889 AL157407.1-201ENST00000435784 904 ntBASIC16.13■□□□□ 0.17
ERCC4Q92889 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC16.13■□□□□ 0.17
ERCC4Q92889 CNN2P10-201ENST00000443067 918 ntBASIC16.13■□□□□ 0.17
ERCC4Q92889 AC100850.1-201ENST00000506768 649 ntBASIC16.13■□□□□ 0.17
ERCC4Q92889 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
ERCC4Q92889 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.13■□□□□ 0.17
ERCC4Q92889 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
ERCC4Q92889 AC132192.2-201ENST00000596206 1147 ntBASIC16.13■□□□□ 0.17
ERCC4Q92889 ZACNP1-201ENST00000612259 710 ntBASIC16.13■□□□□ 0.17
ERCC4Q92889 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 SLC6A6P1-201ENST00000413933 1850 ntBASIC16.13■□□□□ 0.17
ERCC4Q92889 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
ERCC4Q92889 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
ERCC4Q92889 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC16.13■□□□□ 0.17
ERCC4Q92889 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
ERCC4Q92889 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC16.13■□□□□ 0.17
ERCC4Q92889 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ERCC4Q92889 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
ERCC4Q92889 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC16.12■□□□□ 0.17
ERCC4Q92889 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC16.12■□□□□ 0.17
ERCC4Q92889 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 LINC00638-201ENST00000555578 2518 ntBASIC16.12■□□□□ 0.17
ERCC4Q92889 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 AL591122.2-201ENST00000624125 1853 ntBASIC16.12■□□□□ 0.17
ERCC4Q92889 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC16.12■□□□□ 0.17
ERCC4Q92889 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC16.12■□□□□ 0.17
ERCC4Q92889 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 USP39-220ENST00000613444 2161 ntTSL 2 BASIC16.12■□□□□ 0.17
ERCC4Q92889 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 AL023775.1-201ENST00000454907 1746 ntBASIC16.12■□□□□ 0.17
ERCC4Q92889 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
ERCC4Q92889 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
ERCC4Q92889 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC16.12■□□□□ 0.17
ERCC4Q92889 AK6-201ENST00000380818 1183 ntTSL 2 BASIC16.12■□□□□ 0.17
ERCC4Q92889 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
ERCC4Q92889 ST13P19-201ENST00000442505 1124 ntBASIC16.12■□□□□ 0.17
ERCC4Q92889 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.12■□□□□ 0.17
ERCC4Q92889 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC16.12■□□□□ 0.17
ERCC4Q92889 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC16.12■□□□□ 0.17
ERCC4Q92889 AC008825.2-201ENST00000603374 718 ntBASIC16.12■□□□□ 0.17
ERCC4Q92889 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms