Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 MIR1909-201ENST00000411312 80 ntBASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 AC016694.1-201ENST00000434179 700 ntBASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 AC012441.1-201ENST00000446669 685 ntBASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 KRT223P-202ENST00000449164 1292 ntBASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 AC022210.1-201ENST00000449856 793 ntBASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 AC093433.1-201ENST00000458048 571 ntBASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 USP32P1-208ENST00000506594 1164 ntBASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 KSR1-207ENST00000578981 748 ntTSL 4 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 ATF5-205ENST00000600336 682 ntTSL 2 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 TSN-212ENST00000536142 3328 ntTSL 2 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 RAB37-202ENST00000392610 2858 ntTSL 3 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 TGM1-201ENST00000206765 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 GOLGA8IP-202ENST00000611635 2100 ntBASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 AC139712.1-201ENST00000378256 1875 ntBASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC13.36□□□□□ -0.27
DEPDC4Q8N2C3 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 AC079776.1-201ENST00000401540 1152 ntBASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC13.35□□□□□ -0.27
DEPDC4Q8N2C3 GCOM2-201ENST00000509133 1104 ntBASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms