Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
MRE11P49959 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MRE11P49959 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
MRE11P49959 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
MRE11P49959 PACSIN2-202ENST00000337959 3149 ntTSL 5 BASIC16.65■□□□□ 0.26
MRE11P49959 AC009501.1-201ENST00000429952 2069 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MRE11P49959 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
MRE11P49959 C3orf38-201ENST00000318887 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MRE11P49959 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC16.65■□□□□ 0.26
MRE11P49959 PIP5K1A-204ENST00000409426 3737 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
MRE11P49959 AL035456.1-201ENST00000456064 1369 ntBASIC16.64■□□□□ 0.26
MRE11P49959 GDPD5-209ENST00000529721 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
MRE11P49959 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
MRE11P49959 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
MRE11P49959 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MRE11P49959 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MRE11P49959 PER1-202ENST00000354903 3115 ntTSL 2 BASIC16.64■□□□□ 0.25
MRE11P49959 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC16.64■□□□□ 0.25
MRE11P49959 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MRE11P49959 LEPROTL1-201ENST00000321250 3173 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MRE11P49959 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
MRE11P49959 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
MRE11P49959 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
MRE11P49959 SUPT20HL1-201ENST00000436466 2618 ntBASIC16.64■□□□□ 0.25
MRE11P49959 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MRE11P49959 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC16.64■□□□□ 0.25
MRE11P49959 IGF1-203ENST00000392904 761 ntTSL 5 BASIC16.64■□□□□ 0.25
MRE11P49959 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
MRE11P49959 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MRE11P49959 RPL37AP1-201ENST00000412502 279 ntBASIC16.64■□□□□ 0.25
MRE11P49959 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MRE11P49959 CSF2RBP1-201ENST00000447905 391 ntBASIC16.64■□□□□ 0.25
MRE11P49959 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC16.64■□□□□ 0.25
MRE11P49959 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC16.64■□□□□ 0.25
MRE11P49959 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.64■□□□□ 0.25
MRE11P49959 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
MRE11P49959 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC16.64■□□□□ 0.25
MRE11P49959 DERL2-202ENST00000570848 657 ntTSL 5 BASIC16.64■□□□□ 0.25
MRE11P49959 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC16.64■□□□□ 0.25
MRE11P49959 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.64■□□□□ 0.25
MRE11P49959 TMEM233-201ENST00000426426 3081 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
MRE11P49959 PCDHB17P-202ENST00000623466 3066 ntBASIC16.64■□□□□ 0.25
MRE11P49959 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC16.64■□□□□ 0.25
MRE11P49959 TRPV1-209ENST00000576351 2525 ntTSL 5 BASIC16.64■□□□□ 0.25
MRE11P49959 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MRE11P49959 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.64■□□□□ 0.25
MRE11P49959 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC16.64■□□□□ 0.25
MRE11P49959 AC022400.8-201ENST00000623453 3599 ntBASIC16.64■□□□□ 0.25
MRE11P49959 ELP4-203ENST00000395934 1961 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MRE11P49959 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
MRE11P49959 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
MRE11P49959 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MRE11P49959 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC16.63■□□□□ 0.25
MRE11P49959 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MRE11P49959 HARS-207ENST00000504156 3334 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MRE11P49959 SUPV3L1-201ENST00000359655 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MRE11P49959 FAM90A26-201ENST00000512047 2492 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
MRE11P49959 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC16.63■□□□□ 0.25
MRE11P49959 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
MRE11P49959 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MRE11P49959 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MRE11P49959 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC16.63■□□□□ 0.25
MRE11P49959 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
MRE11P49959 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
MRE11P49959 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MRE11P49959 H1FX-AS1-201ENST00000383461 2600 ntTSL 2 BASIC16.63■□□□□ 0.25
MRE11P49959 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.63■□□□□ 0.25
MRE11P49959 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
MRE11P49959 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MRE11P49959 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
MRE11P49959 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MRE11P49959 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC16.63■□□□□ 0.25
MRE11P49959 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MRE11P49959 LBH-202ENST00000401506 485 ntTSL 3 BASIC16.63■□□□□ 0.25
MRE11P49959 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.63■□□□□ 0.25
MRE11P49959 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.63■□□□□ 0.25
MRE11P49959 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC16.63■□□□□ 0.25
MRE11P49959 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC16.63■□□□□ 0.25
MRE11P49959 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.63■□□□□ 0.25
MRE11P49959 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.63■□□□□ 0.25
MRE11P49959 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
MRE11P49959 AL589739.1-201ENST00000607720 493 ntBASIC16.63■□□□□ 0.25
MRE11P49959 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MRE11P49959 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC16.63■□□□□ 0.25
MRE11P49959 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MRE11P49959 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MRE11P49959 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.63■□□□□ 0.25
MRE11P49959 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.63■□□□□ 0.25
MRE11P49959 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
MRE11P49959 MCRIP1-212ENST00000576730 2979 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
MRE11P49959 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MRE11P49959 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
MRE11P49959 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MRE11P49959 CCT8L2-201ENST00000359963 2060 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
MRE11P49959 HNF4A-204ENST00000415691 2302 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MRE11P49959 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC16.63■□□□□ 0.25
MRE11P49959 TBC1D3L-201ENST00000612727 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MRE11P49959 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.62■□□□□ 0.25
MRE11P49959 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MRE11P49959 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms