Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 KCNMA1-232ENST00000638306 3811 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
CDX1P47902 AC110048.1-201ENST00000604293 2157 ntBASIC11.71□□□□□ -0.54
CDX1P47902 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
CDX1P47902 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
CDX1P47902 AC018442.1-201ENST00000421439 2061 ntBASIC11.71□□□□□ -0.54
CDX1P47902 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC11.71□□□□□ -0.54
CDX1P47902 REXO1L6P-201ENST00000603433 1515 ntBASIC11.7□□□□□ -0.54
CDX1P47902 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC11.7□□□□□ -0.54
CDX1P47902 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC11.7□□□□□ -0.54
CDX1P47902 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 MKL1-211ENST00000618196 4248 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC11.7□□□□□ -0.54
CDX1P47902 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
CDX1P47902 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 IMMT-204ENST00000410111 3001 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 SNX21-203ENST00000372541 771 ntTSL 2 BASIC11.7□□□□□ -0.54
CDX1P47902 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC11.7□□□□□ -0.54
CDX1P47902 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
CDX1P47902 RPS15-202ENST00000585665 467 ntTSL 3 BASIC11.7□□□□□ -0.54
CDX1P47902 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC11.7□□□□□ -0.54
CDX1P47902 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC11.7□□□□□ -0.54
CDX1P47902 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 ZFYVE27-201ENST00000337540 2927 ntTSL 2 BASIC11.7□□□□□ -0.54
CDX1P47902 PERM1-202ENST00000433179 3340 ntAPPRIS P2 TSL 5 BASIC11.7□□□□□ -0.54
CDX1P47902 HSPB7-201ENST00000311890 2892 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
CDX1P47902 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
CDX1P47902 AC021752.1-202ENST00000613161 2398 ntTSL 2 BASIC11.7□□□□□ -0.54
CDX1P47902 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 AL157414.3-201ENST00000624276 1954 ntBASIC11.7□□□□□ -0.54
CDX1P47902 POM121L14P-201ENST00000406100 1558 ntBASIC11.7□□□□□ -0.54
CDX1P47902 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC11.7□□□□□ -0.54
CDX1P47902 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC11.7□□□□□ -0.54
CDX1P47902 MCRIP1-212ENST00000576730 2979 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
CDX1P47902 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC11.7□□□□□ -0.54
CDX1P47902 FAM90A11P-201ENST00000518378 2218 ntBASIC11.7□□□□□ -0.54
CDX1P47902 TUBGCP5-208ENST00000620435 3342 ntTSL 2 BASIC11.7□□□□□ -0.54
CDX1P47902 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC11.7□□□□□ -0.54
CDX1P47902 KRT17P5-202ENST00000444070 2552 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CDX1P47902 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC11.7□□□□□ -0.54
CDX1P47902 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
CDX1P47902 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
CDX1P47902 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC11.7□□□□□ -0.54
CDX1P47902 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
CDX1P47902 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC11.69□□□□□ -0.54
CDX1P47902 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC11.69□□□□□ -0.54
CDX1P47902 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
CDX1P47902 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
CDX1P47902 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC11.69□□□□□ -0.54
CDX1P47902 HERC3-203ENST00000407637 2634 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 CLCNKB-202ENST00000375679 2567 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC11.69□□□□□ -0.54
CDX1P47902 TRPM5-202ENST00000528453 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC11.69□□□□□ -0.54
CDX1P47902 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC11.69□□□□□ -0.54
CDX1P47902 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 CNN2P10-201ENST00000443067 918 ntBASIC11.69□□□□□ -0.54
CDX1P47902 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
CDX1P47902 MESTP3-201ENST00000503460 968 ntBASIC11.69□□□□□ -0.54
CDX1P47902 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC11.69□□□□□ -0.54
CDX1P47902 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC11.69□□□□□ -0.54
CDX1P47902 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC11.69□□□□□ -0.54
CDX1P47902 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC11.69□□□□□ -0.54
CDX1P47902 RN7SL219P-201ENST00000582872 296 ntBASIC11.69□□□□□ -0.54
CDX1P47902 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC11.69□□□□□ -0.54
CDX1P47902 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC11.69□□□□□ -0.54
CDX1P47902 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC11.69□□□□□ -0.54
CDX1P47902 TBC1D22B-201ENST00000373491 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
CDX1P47902 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms