Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.91□□□□□ -0.02
BDNFP23560 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.91□□□□□ -0.02
BDNFP23560 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
BDNFP23560 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC14.91□□□□□ -0.02
BDNFP23560 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
BDNFP23560 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC14.91□□□□□ -0.02
BDNFP23560 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC14.91□□□□□ -0.02
BDNFP23560 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC14.91□□□□□ -0.02
BDNFP23560 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC14.91□□□□□ -0.02
BDNFP23560 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC14.91□□□□□ -0.02
BDNFP23560 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC14.91□□□□□ -0.02
BDNFP23560 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC14.91□□□□□ -0.02
BDNFP23560 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC14.91□□□□□ -0.02
BDNFP23560 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC14.91□□□□□ -0.02
BDNFP23560 HERC2P11-201ENST00000562845 725 ntBASIC14.91□□□□□ -0.02
BDNFP23560 AC100756.2-201ENST00000569537 736 ntBASIC14.91□□□□□ -0.02
BDNFP23560 COX6A1P2-201ENST00000620597 330 ntBASIC14.91□□□□□ -0.02
BDNFP23560 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
BDNFP23560 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.91□□□□□ -0.02
BDNFP23560 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC14.91□□□□□ -0.02
BDNFP23560 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC14.91□□□□□ -0.02
BDNFP23560 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 KRT8P18-201ENST00000413425 1445 ntBASIC14.91□□□□□ -0.02
BDNFP23560 SARS-202ENST00000369923 1882 ntTSL 5 BASIC14.91□□□□□ -0.02
BDNFP23560 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
BDNFP23560 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 KRT8P43-201ENST00000406052 1458 ntBASIC14.9□□□□□ -0.02
BDNFP23560 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.9□□□□□ -0.02
BDNFP23560 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.9□□□□□ -0.02
BDNFP23560 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 PYY2-201ENST00000315776 282 ntBASIC14.9□□□□□ -0.02
BDNFP23560 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC14.9□□□□□ -0.02
BDNFP23560 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 Z69890.1-201ENST00000382990 339 ntBASIC14.9□□□□□ -0.02
BDNFP23560 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC14.9□□□□□ -0.02
BDNFP23560 PPP1R2P4-201ENST00000424051 595 ntBASIC14.9□□□□□ -0.02
BDNFP23560 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC14.9□□□□□ -0.02
BDNFP23560 AC098934.1-203ENST00000442868 1262 ntBASIC14.9□□□□□ -0.02
BDNFP23560 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC14.9□□□□□ -0.02
BDNFP23560 SCARNA12-201ENST00000459155 270 ntBASIC14.9□□□□□ -0.02
BDNFP23560 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
BDNFP23560 IQSEC3P1-201ENST00000538799 536 ntBASIC14.9□□□□□ -0.02
BDNFP23560 AC145285.5-201ENST00000562217 361 ntBASIC14.9□□□□□ -0.02
BDNFP23560 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC14.9□□□□□ -0.02
BDNFP23560 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 BAP1-211ENST00000615113 489 ntBASIC14.9□□□□□ -0.02
BDNFP23560 AC025262.2-201ENST00000623975 1056 ntBASIC14.9□□□□□ -0.02
BDNFP23560 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
BDNFP23560 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.9□□□□□ -0.02
BDNFP23560 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
BDNFP23560 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC14.9□□□□□ -0.02
BDNFP23560 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
BDNFP23560 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
BDNFP23560 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.9□□□□□ -0.02
BDNFP23560 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.9□□□□□ -0.02
BDNFP23560 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC14.9□□□□□ -0.02
BDNFP23560 EML1-203ENST00000334192 4064 ntTSL 5 BASIC14.9□□□□□ -0.02
BDNFP23560 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
BDNFP23560 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
BDNFP23560 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms