Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VCANP13611 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VCANP13611 MROH4P-201ENST00000431302 1578 ntBASIC14.14□□□□□ -0.15
VCANP13611 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
VCANP13611 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.13□□□□□ -0.15
VCANP13611 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
VCANP13611 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VCANP13611 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VCANP13611 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VCANP13611 C12orf45-201ENST00000280749 459 ntTSL 3 BASIC14.13□□□□□ -0.15
VCANP13611 snoZ6.3-201ENST00000583496 76 ntBASIC14.13□□□□□ -0.15
VCANP13611 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VCANP13611 GH2-205ENST00000622506 702 ntTSL 5 BASIC14.13□□□□□ -0.15
VCANP13611 SLC50A1-214ENST00000622581 1245 ntTSL 5 BASIC14.13□□□□□ -0.15
VCANP13611 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.13□□□□□ -0.15
VCANP13611 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VCANP13611 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
VCANP13611 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VCANP13611 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
VCANP13611 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VCANP13611 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
VCANP13611 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC14.13□□□□□ -0.15
VCANP13611 CMC2-204ENST00000562713 573 ntTSL 3 BASIC14.13□□□□□ -0.15
VCANP13611 AC021439.1-201ENST00000562975 591 ntTSL 4 BASIC14.13□□□□□ -0.15
VCANP13611 CMC2-209ENST00000565108 399 ntTSL 2 BASIC14.13□□□□□ -0.15
VCANP13611 AC133555.4-201ENST00000569081 152 ntBASIC14.13□□□□□ -0.15
VCANP13611 MIR4689-201ENST00000582517 70 ntBASIC14.13□□□□□ -0.15
VCANP13611 AC010325.1-203ENST00000636757 380 ntAPPRIS P5 TSL 5 BASIC14.13□□□□□ -0.15
VCANP13611 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VCANP13611 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VCANP13611 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VCANP13611 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC14.13□□□□□ -0.15
VCANP13611 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VCANP13611 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VCANP13611 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VCANP13611 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
VCANP13611 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
VCANP13611 CACNA2D4-209ENST00000538450 1498 ntTSL 2 BASIC14.13□□□□□ -0.15
VCANP13611 USP39-220ENST00000613444 2161 ntTSL 2 BASIC14.13□□□□□ -0.15
VCANP13611 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VCANP13611 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
VCANP13611 AL354704.1-201ENST00000629369 1966 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VCANP13611 LAMTOR2-203ENST00000368305 655 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VCANP13611 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
VCANP13611 HNRNPA1P3-201ENST00000440968 551 ntBASIC14.13□□□□□ -0.15
VCANP13611 GULOP-201ENST00000454030 748 ntBASIC14.13□□□□□ -0.15
VCANP13611 NDUFB1-202ENST00000553514 454 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
VCANP13611 CLPP-204ENST00000596149 745 ntTSL 2 BASIC14.13□□□□□ -0.15
VCANP13611 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
VCANP13611 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.12□□□□□ -0.15
VCANP13611 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.12□□□□□ -0.15
VCANP13611 SLC25A18-202ENST00000399813 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 AC104212.2-201ENST00000478813 628 ntBASIC14.12□□□□□ -0.15
VCANP13611 OPRM1-211ENST00000518759 1060 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 AC022634.2-201ENST00000521504 382 ntTSL 3 BASIC14.12□□□□□ -0.15
VCANP13611 KIAA1191-211ENST00000533553 560 ntTSL 3 BASIC14.12□□□□□ -0.15
VCANP13611 AC046168.2-202ENST00000561123 926 ntTSL 3 BASIC14.12□□□□□ -0.15
VCANP13611 Z92544.2-202ENST00000566927 407 ntTSL 3 BASIC14.12□□□□□ -0.15
VCANP13611 BACH1-AS1-202ENST00000615718 700 ntTSL 5 BASIC14.12□□□□□ -0.15
VCANP13611 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 AC015688.4-201ENST00000580780 1647 ntBASIC14.12□□□□□ -0.15
VCANP13611 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.12□□□□□ -0.15
VCANP13611 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
VCANP13611 CDCA7L-202ENST00000373934 1830 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
VCANP13611 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
VCANP13611 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC14.12□□□□□ -0.15
VCANP13611 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC14.12□□□□□ -0.15
VCANP13611 SDCBP2P1-201ENST00000416115 614 ntBASIC14.12□□□□□ -0.15
VCANP13611 AC006001.3-205ENST00000428370 579 ntBASIC14.12□□□□□ -0.15
VCANP13611 AC022447.2-201ENST00000509750 543 ntTSL 3 BASIC14.12□□□□□ -0.15
VCANP13611 KIAA1191-210ENST00000510164 1243 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 AP001102.1-201ENST00000528959 409 ntBASIC14.12□□□□□ -0.15
VCANP13611 AC089987.3-201ENST00000551847 588 ntTSL 4 BASIC14.12□□□□□ -0.15
VCANP13611 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC14.12□□□□□ -0.15
VCANP13611 MAX-218ENST00000557746 571 ntTSL 4 BASIC14.12□□□□□ -0.15
VCANP13611 AC006547.1-206ENST00000600617 878 ntTSL 5 BASIC14.12□□□□□ -0.15
VCANP13611 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 CREB5-205ENST00000409603 1944 ntTSL 2 BASIC14.12□□□□□ -0.15
VCANP13611 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
VCANP13611 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC14.12□□□□□ -0.15
VCANP13611 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
VCANP13611 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
VCANP13611 NTF3-201ENST00000331010 1028 ntAPPRIS P3 BASIC14.11□□□□□ -0.15
VCANP13611 SNORD88B-201ENST00000408454 91 ntBASIC14.11□□□□□ -0.15
VCANP13611 SNHG11-211ENST00000444816 621 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 SNHG11-214ENST00000457218 880 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 CALM3-206ENST00000594523 540 ntTSL 4 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms