Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.59■□□□□ 0.25
HLA-DOAP06340 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC16.59■□□□□ 0.25
HLA-DOAP06340 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
HLA-DOAP06340 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 OR7E115P-201ENST00000382617 1024 ntBASIC16.59■□□□□ 0.25
HLA-DOAP06340 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC16.59■□□□□ 0.25
HLA-DOAP06340 NME4-203ENST00000397722 1232 ntTSL 2 BASIC16.59■□□□□ 0.25
HLA-DOAP06340 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC16.59■□□□□ 0.25
HLA-DOAP06340 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC16.59■□□□□ 0.25
HLA-DOAP06340 PPIA-208ENST00000489459 907 ntTSL 2 BASIC16.59■□□□□ 0.25
HLA-DOAP06340 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC16.59■□□□□ 0.25
HLA-DOAP06340 AC093300.1-201ENST00000510368 1201 ntBASIC16.59■□□□□ 0.25
HLA-DOAP06340 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC16.59■□□□□ 0.25
HLA-DOAP06340 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 AL132994.1-201ENST00000554098 400 ntBASIC16.59■□□□□ 0.25
HLA-DOAP06340 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC16.59■□□□□ 0.25
HLA-DOAP06340 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC16.59■□□□□ 0.25
HLA-DOAP06340 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC16.59■□□□□ 0.25
HLA-DOAP06340 AL118522.1-201ENST00000611368 560 ntBASIC16.59■□□□□ 0.25
HLA-DOAP06340 PPIA-210ENST00000620047 827 ntTSL 5 BASIC16.59■□□□□ 0.25
HLA-DOAP06340 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC16.59■□□□□ 0.25
HLA-DOAP06340 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.59■□□□□ 0.25
HLA-DOAP06340 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DOAP06340 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC16.59■□□□□ 0.25
HLA-DOAP06340 GOLGA8UP-201ENST00000527159 1755 ntBASIC16.59■□□□□ 0.25
HLA-DOAP06340 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC16.58■□□□□ 0.25
HLA-DOAP06340 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HLA-DOAP06340 USP39-207ENST00000450066 2086 ntTSL 2 BASIC16.58■□□□□ 0.25
HLA-DOAP06340 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
HLA-DOAP06340 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC16.58■□□□□ 0.25
HLA-DOAP06340 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HLA-DOAP06340 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HLA-DOAP06340 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
HLA-DOAP06340 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HLA-DOAP06340 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
HLA-DOAP06340 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DOAP06340 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DOAP06340 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
HLA-DOAP06340 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DOAP06340 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
HLA-DOAP06340 STK16-203ENST00000409516 895 ntTSL 2 BASIC16.58■□□□□ 0.24
HLA-DOAP06340 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC16.58■□□□□ 0.24
HLA-DOAP06340 BCAS2P2-201ENST00000425064 674 ntBASIC16.58■□□□□ 0.24
HLA-DOAP06340 RPL13AP19-201ENST00000434320 584 ntBASIC16.58■□□□□ 0.24
HLA-DOAP06340 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DOAP06340 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
HLA-DOAP06340 STK24P1-201ENST00000455035 1291 ntBASIC16.58■□□□□ 0.24
HLA-DOAP06340 AC006529.1-201ENST00000459978 637 ntBASIC16.58■□□□□ 0.24
HLA-DOAP06340 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC16.58■□□□□ 0.24
HLA-DOAP06340 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
HLA-DOAP06340 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
HLA-DOAP06340 BATF-202ENST00000555504 361 ntTSL 2 BASIC16.58■□□□□ 0.24
HLA-DOAP06340 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DOAP06340 AC012073.1-201ENST00000606114 1108 ntBASIC16.58■□□□□ 0.24
HLA-DOAP06340 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DOAP06340 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DOAP06340 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DOAP06340 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
HLA-DOAP06340 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DOAP06340 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DOAP06340 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
HLA-DOAP06340 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
HLA-DOAP06340 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC16.58■□□□□ 0.24
HLA-DOAP06340 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DOAP06340 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
HLA-DOAP06340 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DOAP06340 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DOAP06340 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DOAP06340 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DOAP06340 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DOAP06340 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DOAP06340 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DOAP06340 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DOAP06340 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms