Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
NKX2-2O95096 ELK2AP-201ENST00000392510 1007 ntBASIC13.04□□□□□ -0.32
NKX2-2O95096 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC13.04□□□□□ -0.32
NKX2-2O95096 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC13.04□□□□□ -0.32
NKX2-2O95096 BANF1P3-201ENST00000412556 261 ntBASIC13.04□□□□□ -0.32
NKX2-2O95096 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC13.04□□□□□ -0.32
NKX2-2O95096 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC13.04□□□□□ -0.32
NKX2-2O95096 PFN2-206ENST00000461930 606 ntTSL 4 BASIC13.04□□□□□ -0.32
NKX2-2O95096 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
NKX2-2O95096 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC13.04□□□□□ -0.32
NKX2-2O95096 SLC25A15P3-201ENST00000505530 290 ntBASIC13.04□□□□□ -0.32
NKX2-2O95096 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC13.04□□□□□ -0.32
NKX2-2O95096 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC13.04□□□□□ -0.32
NKX2-2O95096 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC13.04□□□□□ -0.32
NKX2-2O95096 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC13.04□□□□□ -0.32
NKX2-2O95096 JPT2-214ENST00000569765 782 ntTSL 2 BASIC13.04□□□□□ -0.32
NKX2-2O95096 CENPX-208ENST00000584347 799 ntTSL 2 BASIC13.04□□□□□ -0.32
NKX2-2O95096 AL021707.6-201ENST00000609212 491 ntBASIC13.04□□□□□ -0.32
NKX2-2O95096 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC13.04□□□□□ -0.32
NKX2-2O95096 MIR6769A-201ENST00000617340 73 ntBASIC13.04□□□□□ -0.32
NKX2-2O95096 AL139424.3-202ENST00000641619 917 ntBASIC13.04□□□□□ -0.32
NKX2-2O95096 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC13.04□□□□□ -0.32
NKX2-2O95096 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC13.04□□□□□ -0.32
NKX2-2O95096 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC13.04□□□□□ -0.32
NKX2-2O95096 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.04□□□□□ -0.32
NKX2-2O95096 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 AC004554.1-201ENST00000422830 1468 ntBASIC13.04□□□□□ -0.32
NKX2-2O95096 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
NKX2-2O95096 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
NKX2-2O95096 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC13.03□□□□□ -0.32
NKX2-2O95096 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC13.03□□□□□ -0.32
NKX2-2O95096 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC13.03□□□□□ -0.32
NKX2-2O95096 CMC1-204ENST00000423894 549 ntTSL 2 BASIC13.03□□□□□ -0.32
NKX2-2O95096 NAGK-204ENST00000443872 878 ntTSL 3 BASIC13.03□□□□□ -0.32
NKX2-2O95096 AC099548.2-209ENST00000480264 625 ntBASIC13.03□□□□□ -0.32
NKX2-2O95096 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC13.03□□□□□ -0.32
NKX2-2O95096 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC13.03□□□□□ -0.32
NKX2-2O95096 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC13.03□□□□□ -0.32
NKX2-2O95096 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC13.03□□□□□ -0.32
NKX2-2O95096 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC13.03□□□□□ -0.32
NKX2-2O95096 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
NKX2-2O95096 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC13.03□□□□□ -0.32
NKX2-2O95096 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC13.03□□□□□ -0.32
NKX2-2O95096 AL161670.2-201ENST00000557650 1227 ntBASIC13.03□□□□□ -0.32
NKX2-2O95096 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
NKX2-2O95096 PHBP15-201ENST00000574228 665 ntBASIC13.03□□□□□ -0.32
NKX2-2O95096 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
NKX2-2O95096 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC13.03□□□□□ -0.32
NKX2-2O95096 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC13.03□□□□□ -0.32
NKX2-2O95096 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC13.03□□□□□ -0.32
NKX2-2O95096 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
NKX2-2O95096 LINC01783-202ENST00000614408 828 ntBASIC13.03□□□□□ -0.32
NKX2-2O95096 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC13.03□□□□□ -0.32
NKX2-2O95096 BX284668.2-205ENST00000619677 828 ntBASIC13.03□□□□□ -0.32
NKX2-2O95096 AC015967.2-201ENST00000624092 234 ntBASIC13.03□□□□□ -0.32
NKX2-2O95096 AC006435.4-201ENST00000625037 234 ntBASIC13.03□□□□□ -0.32
NKX2-2O95096 AL356737.1-201ENST00000634391 234 ntBASIC13.03□□□□□ -0.32
NKX2-2O95096 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.03□□□□□ -0.32
NKX2-2O95096 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC13.03□□□□□ -0.32
NKX2-2O95096 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
NKX2-2O95096 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC13.03□□□□□ -0.32
NKX2-2O95096 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC13.03□□□□□ -0.32
NKX2-2O95096 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC13.03□□□□□ -0.32
NKX2-2O95096 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC13.03□□□□□ -0.32
NKX2-2O95096 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
NKX2-2O95096 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC13.03□□□□□ -0.32
NKX2-2O95096 KRT8P43-201ENST00000406052 1458 ntBASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms