Protein–RNA interactions for Protein: Q9HCM3

KIAA1549, UPF0606 protein KIAA1549, humanhuman

Predictions only

Length 1,950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KIAA1549Q9HCM3 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 RPL13AP3-202ENST00000494676 1473 ntBASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 AC061965.1-201ENST00000560524 1465 ntBASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 PPP1R26P4-201ENST00000619065 3527 ntBASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 FTX-216ENST00000638985 1367 ntTSL 5 BASIC12.48□□□□□ -0.41
KIAA1549Q9HCM3 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 CSNK1G2P1-201ENST00000442675 955 ntBASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 GRPEL2P1-201ENST00000453145 339 ntBASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 PES1P2-201ENST00000449745 1735 ntBASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 BUD31-205ENST00000456893 512 ntTSL 5 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 RPS23-204ENST00000507980 836 ntTSL 2 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 SNORD3B-1-201ENST00000577988 758 ntBASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 AC127024.7-201ENST00000625101 200 ntBASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC12.47□□□□□ -0.41
KIAA1549Q9HCM3 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 DDC-204ENST00000426377 1700 ntTSL 3 BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 SAT1-201ENST00000379251 801 ntTSL 2 BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 SAT1-202ENST00000379253 909 ntTSL 2 BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 SAT1-203ENST00000379254 868 ntTSL 3 BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 RNA5SP406-201ENST00000516106 112 ntBASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 AC132812.1-201ENST00000583145 892 ntBASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC12.46□□□□□ -0.41
KIAA1549Q9HCM3 AC010976.2-201ENST00000609697 852 ntBASIC12.46□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms