Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC16.4■□□□□ 0.22
COL4A5P29400 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 PDLIM2-212ENST00000443561 701 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A5P29400 AF186996.6-201ENST00000485294 149 ntBASIC16.4■□□□□ 0.22
COL4A5P29400 RPL10P8-201ENST00000522888 313 ntBASIC16.4■□□□□ 0.22
COL4A5P29400 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 NAT9-219ENST00000582524 573 ntTSL 4 BASIC16.4■□□□□ 0.22
COL4A5P29400 RN7SL202P-201ENST00000584410 262 ntBASIC16.4■□□□□ 0.22
COL4A5P29400 TMEM230-211ENST00000615008 594 ntTSL 4 BASIC16.4■□□□□ 0.22
COL4A5P29400 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 AC008993.3-201ENST00000633603 631 ntTSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 AL590094.1-206ENST00000635959 478 ntTSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 AL590094.1-209ENST00000637260 499 ntTSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A5P29400 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL4A5P29400 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A5P29400 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A5P29400 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
COL4A5P29400 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.39■□□□□ 0.22
COL4A5P29400 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC16.39■□□□□ 0.22
COL4A5P29400 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
COL4A5P29400 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
COL4A5P29400 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
COL4A5P29400 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.39■□□□□ 0.21
COL4A5P29400 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC16.39■□□□□ 0.21
COL4A5P29400 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
COL4A5P29400 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC16.39■□□□□ 0.21
COL4A5P29400 CCDC42-201ENST00000293845 1374 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
COL4A5P29400 FAHD2A-204ENST00000447036 1366 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
COL4A5P29400 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.39■□□□□ 0.21
COL4A5P29400 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
COL4A5P29400 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 SNORA30.1-201ENST00000363193 129 ntBASIC16.39■□□□□ 0.21
COL4A5P29400 PMF1-201ENST00000368273 884 ntTSL 2 BASIC16.39■□□□□ 0.21
COL4A5P29400 RNASEH2CP1-201ENST00000454281 502 ntBASIC16.39■□□□□ 0.21
COL4A5P29400 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC16.39■□□□□ 0.21
COL4A5P29400 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC16.39■□□□□ 0.21
COL4A5P29400 AC027228.1-201ENST00000560094 325 ntTSL 3 BASIC16.39■□□□□ 0.21
COL4A5P29400 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC16.39■□□□□ 0.21
COL4A5P29400 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC16.39■□□□□ 0.21
COL4A5P29400 AC112220.4-201ENST00000604982 1263 ntBASIC16.39■□□□□ 0.21
COL4A5P29400 SDHD-214ENST00000614349 516 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
COL4A5P29400 AC134878.2-201ENST00000620700 1265 ntBASIC16.39■□□□□ 0.21
COL4A5P29400 GTF3A-209ENST00000640289 1098 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
COL4A5P29400 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
COL4A5P29400 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC16.39■□□□□ 0.21
COL4A5P29400 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.39■□□□□ 0.21
COL4A5P29400 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
COL4A5P29400 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A5P29400 HLA-DQA1-201ENST00000343139 1591 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
COL4A5P29400 STK25-235ENST00000543554 2556 ntTSL 2 BASIC16.38■□□□□ 0.21
COL4A5P29400 AF013593.1-201ENST00000458074 1487 ntBASIC16.38■□□□□ 0.21
COL4A5P29400 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A5P29400 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A5P29400 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A5P29400 RANGRF-201ENST00000226105 1009 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A5P29400 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A5P29400 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A5P29400 CMTM5-204ENST00000382809 378 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A5P29400 FAM178B-201ENST00000393526 1004 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A5P29400 MIR1226-201ENST00000408658 75 ntBASIC16.38■□□□□ 0.21
COL4A5P29400 WDR54-202ENST00000409791 854 ntTSL 3 BASIC16.38■□□□□ 0.21
COL4A5P29400 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC16.38■□□□□ 0.21
COL4A5P29400 BX088651.3-201ENST00000418155 352 ntBASIC16.38■□□□□ 0.21
COL4A5P29400 SAP18P2-201ENST00000434334 459 ntBASIC16.38■□□□□ 0.21
COL4A5P29400 CHN2-214ENST00000439711 755 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A5P29400 AP000959.1-201ENST00000441759 977 ntTSL 3 BASIC16.38■□□□□ 0.21
COL4A5P29400 AC142381.4-201ENST00000566806 702 ntTSL 3 BASIC16.38■□□□□ 0.21
COL4A5P29400 AC142086.5-201ENST00000567619 702 ntTSL 5 BASIC16.38■□□□□ 0.21
COL4A5P29400 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A5P29400 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC16.38■□□□□ 0.21
COL4A5P29400 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
COL4A5P29400 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A5P29400 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC16.38■□□□□ 0.21
COL4A5P29400 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC16.38■□□□□ 0.21
COL4A5P29400 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A5P29400 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.38■□□□□ 0.21
COL4A5P29400 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms