Protein–RNA interactions for Protein: P20036

HLA-DPA1, HLA class II histocompatibility antigen, DP alpha 1 chain, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1P20036 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 USP3-204ENST00000540797 5474 ntTSL 2 BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 RCC2P1-201ENST00000452257 1476 ntBASIC14.34□□□□□ -0.11
HLA-DPA1P20036 AC061965.1-201ENST00000560524 1465 ntBASIC14.34□□□□□ -0.11
HLA-DPA1P20036 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 RNA5SP359-201ENST00000364838 113 ntBASIC14.34□□□□□ -0.11
HLA-DPA1P20036 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 AC016700.1-201ENST00000429424 312 ntBASIC14.34□□□□□ -0.11
HLA-DPA1P20036 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 AC020907.1-201ENST00000616460 1350 ntBASIC14.34□□□□□ -0.11
HLA-DPA1P20036 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC14.34□□□□□ -0.11
HLA-DPA1P20036 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HLA-DPA1P20036 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HLA-DPA1P20036 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HLA-DPA1P20036 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HLA-DPA1P20036 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
HLA-DPA1P20036 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
HLA-DPA1P20036 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC14.33□□□□□ -0.11
HLA-DPA1P20036 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
HLA-DPA1P20036 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 LBH-202ENST00000401506 485 ntTSL 3 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 AC244452.3-201ENST00000636814 210 ntBASIC14.33□□□□□ -0.12
HLA-DPA1P20036 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 BRD7P5-201ENST00000299197 1822 ntBASIC14.33□□□□□ -0.12
HLA-DPA1P20036 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
HLA-DPA1P20036 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC14.32□□□□□ -0.12
HLA-DPA1P20036 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DPA1P20036 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms