Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ZNF766-202ENST00000593612 2331 ntAPPRIS ALT2 TSL 2 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 ALOX5-201ENST00000374391 2506 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 PLEC-204ENST00000354958 14751 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 AC020763.3-201ENST00000625095 2904 ntBASIC8.74□□□□□ -1.01
LINC00643Q86TS7 TP53AIP1-206ENST00000602346 3124 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 TMEM164-201ENST00000288381 5452 ntTSL 5 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 CSTF2-201ENST00000372972 1958 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 NPEPPS-201ENST00000322157 4353 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 PTPRK-203ENST00000368207 4758 ntTSL 5 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 DDX39B-214ENST00000458640 2003 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 CELF4-203ENST00000420428 4052 ntAPPRIS P3 TSL 5 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 CEP112-202ENST00000392769 3517 ntAPPRIS P4 TSL 5 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 AC098650.1-201ENST00000635992 3535 ntAPPRIS P1 TSL 5 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 SON-201ENST00000300278 7477 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 METTL13-201ENST00000361735 3327 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 C3orf35-201ENST00000328376 1859 ntAPPRIS P5 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 AFAP1L1-201ENST00000296721 4177 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 ASAH1-202ENST00000314146 1690 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 SALL4P6-201ENST00000429385 1691 ntBASIC8.73□□□□□ -1.01
LINC00643Q86TS7 IRF5-201ENST00000249375 2749 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 ACSBG2-202ENST00000586696 2739 ntAPPRIS P3 TSL 2 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 GZF1-201ENST00000338121 4835 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 TRAK1-202ENST00000341421 4620 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 DDX50-201ENST00000373585 2538 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 CYP51A1P2-201ENST00000419457 1499 ntBASIC8.73□□□□□ -1.01
LINC00643Q86TS7 KBTBD12-203ENST00000405256 5268 ntAPPRIS P1 TSL 5 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 USP5-201ENST00000229268 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 CHMP3-201ENST00000263856 3171 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 AC005521.1-201ENST00000393351 872 ntBASIC8.73□□□□□ -1.01
LINC00643Q86TS7 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 FIS1-203ENST00000442303 631 ntTSL 3 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 VENTXP7-201ENST00000475503 772 ntBASIC8.73□□□□□ -1.01
LINC00643Q86TS7 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 AC098934.4-201ENST00000564127 592 ntBASIC8.73□□□□□ -1.01
LINC00643Q86TS7 AC084262.1-201ENST00000567818 751 ntBASIC8.73□□□□□ -1.01
LINC00643Q86TS7 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 UBL5-208ENST00000593087 320 ntTSL 3 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 AC133041.1-202ENST00000642053 222 ntBASIC8.73□□□□□ -1.01
LINC00643Q86TS7 NLRC3-201ENST00000324659 3414 ntTSL 5 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 AGAP1-212ENST00000614409 9932 ntTSL 5 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 ALDH8A1-203ENST00000367845 2383 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 TACR1-201ENST00000305249 4959 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 ABI1-203ENST00000376137 3467 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 ATP7B-203ENST00000400366 6304 ntAPPRIS ALT2 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 OAS1-208ENST00000551241 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 HERC6-201ENST00000264346 3779 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 PMEL-204ENST00000548493 2204 ntAPPRIS P3 TSL 2 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 SLC12A3-202ENST00000438926 5567 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 FHDC1-201ENST00000260008 6480 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 GRM4-201ENST00000374177 3590 ntTSL 2 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 AL135960.1-201ENST00000422216 4036 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 CRP-201ENST00000255030 2015 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 PRLR-211ENST00000511486 1566 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 PRKAR1A-217ENST00000589228 4256 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 GRM4-202ENST00000374181 7275 ntTSL 5 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 POM121L1P-202ENST00000605258 1835 ntBASIC8.73□□□□□ -1.01
LINC00643Q86TS7 EXOC7-201ENST00000332065 4596 ntAPPRIS P3 TSL 2 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 EFL1-201ENST00000268206 3675 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 PIGG-203ENST00000453061 3218 ntAPPRIS ALT1 TSL 1 (best) BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC8.73□□□□□ -1.01
LINC00643Q86TS7 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 NLRP2-209ENST00000537859 3507 ntAPPRIS ALT2 TSL 2 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 ORAI2-201ENST00000356387 10811 ntAPPRIS P1 TSL 5 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 PARP6-223ENST00000616176 2102 ntTSL 5 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 EGFR-211ENST00000638463 4735 ntTSL 5 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 SLC24A1-202ENST00000339868 5678 ntAPPRIS ALT2 TSL 5 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 TRIM46-201ENST00000334634 3061 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 KRT8P14-201ENST00000414254 1442 ntBASIC8.72□□□□□ -1.01
LINC00643Q86TS7 MTR-202ENST00000366577 10529 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 SEC24B-203ENST00000504968 4066 ntAPPRIS ALT2 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 YWHAB-202ENST00000372839 3109 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 ARHGEF9-218ENST00000624843 2154 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 139.4 ms