Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 RPL10-203ENST00000406022 748 ntTSL 3 BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 AC006547.1-209ENST00000596334 996 ntTSL 5 BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 Z82244.2-201ENST00000632196 448 ntBASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 FMO6P-201ENST00000236166 1620 ntBASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 AC099063.4-201ENST00000641099 1602 ntBASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 AC090643.2-201ENST00000623442 2029 ntBASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 RPL13AP3-202ENST00000494676 1473 ntBASIC16.91■□□□□ 0.3
CCDC88AQ3V6T2 JPT2-203ENST00000382711 894 ntTSL 4 BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 MIR1307-201ENST00000408840 149 ntBASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 SLC25A15P1-201ENST00000456738 342 ntBASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 RPS5-205ENST00000598495 800 ntTSL 3 BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 AL137077.2-201ENST00000635124 1608 ntBASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 KRT8P6-201ENST00000399259 1207 ntBASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 SNRPCP15-201ENST00000424055 192 ntBASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 YY1P2-201ENST00000438766 948 ntBASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 CDKN2A-AS1-201ENST00000441769 823 ntBASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 AL161727.1-201ENST00000457409 530 ntBASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 AC048382.6-201ENST00000621980 1223 ntBASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88AQ3V6T2 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CCDC88AQ3V6T2 AC152010.1-201ENST00000415779 2006 ntBASIC16.89■□□□□ 0.3
CCDC88AQ3V6T2 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CCDC88AQ3V6T2 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
CCDC88AQ3V6T2 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC16.89■□□□□ 0.3
CCDC88AQ3V6T2 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
CCDC88AQ3V6T2 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 HSD3BP1-201ENST00000286193 1111 ntBASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 MIR1226-201ENST00000408658 75 ntBASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 RNA5SP288-201ENST00000516075 93 ntBASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 RN7SL300P-201ENST00000582522 318 ntBASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 RN7SL478P-201ENST00000584358 298 ntBASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 IFNL3P1-201ENST00000595082 501 ntBASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms