Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 KRT8P31-201ENST00000504812 1408 ntBASIC13.73□□□□□ -0.21
COL28A1Q2UY09 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 AC020910.5-201ENST00000623668 1865 ntBASIC13.72□□□□□ -0.21
COL28A1Q2UY09 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 SURF4-203ENST00000371991 715 ntTSL 3 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 NME4-203ENST00000397722 1232 ntTSL 2 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 AC083801.1-201ENST00000491689 358 ntBASIC13.72□□□□□ -0.21
COL28A1Q2UY09 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 AC114947.1-202ENST00000514136 344 ntBASIC13.72□□□□□ -0.21
COL28A1Q2UY09 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 HLA-DQB1-202ENST00000399079 1501 ntBASIC13.72□□□□□ -0.21
COL28A1Q2UY09 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 AC018529.2-202ENST00000611482 3087 ntBASIC13.72□□□□□ -0.21
COL28A1Q2UY09 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.72□□□□□ -0.21
COL28A1Q2UY09 AC018442.1-201ENST00000421439 2061 ntBASIC13.71□□□□□ -0.21
COL28A1Q2UY09 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 CR383656.2-201ENST00000548656 2254 ntBASIC13.71□□□□□ -0.21
COL28A1Q2UY09 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 AC021305.1-201ENST00000520656 1514 ntBASIC13.71□□□□□ -0.21
COL28A1Q2UY09 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 AC063952.3-201ENST00000467756 308 ntBASIC13.71□□□□□ -0.21
COL28A1Q2UY09 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 SRP14-204ENST00000558720 780 ntTSL 2 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 HERC2P11-201ENST00000562845 725 ntBASIC13.71□□□□□ -0.21
COL28A1Q2UY09 AC100756.2-201ENST00000569537 736 ntBASIC13.71□□□□□ -0.21
COL28A1Q2UY09 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC13.71□□□□□ -0.21
COL28A1Q2UY09 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
COL28A1Q2UY09 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL28A1Q2UY09 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
COL28A1Q2UY09 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms