Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC13.17□□□□□ -0.3
RNF4P78317 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 KRT8P19-201ENST00000551916 1455 ntBASIC13.17□□□□□ -0.3
RNF4P78317 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC13.17□□□□□ -0.3
RNF4P78317 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
RNF4P78317 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC13.17□□□□□ -0.3
RNF4P78317 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
RNF4P78317 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 UCKL1-AS1-201ENST00000623569 3602 ntBASIC13.17□□□□□ -0.3
RNF4P78317 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC13.17□□□□□ -0.3
RNF4P78317 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC13.17□□□□□ -0.3
RNF4P78317 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
RNF4P78317 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 AC006987.1-201ENST00000413610 527 ntBASIC13.17□□□□□ -0.3
RNF4P78317 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC13.17□□□□□ -0.3
RNF4P78317 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC13.17□□□□□ -0.3
RNF4P78317 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC13.17□□□□□ -0.3
RNF4P78317 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC13.17□□□□□ -0.3
RNF4P78317 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC13.17□□□□□ -0.3
RNF4P78317 CHCHD2P2-201ENST00000503744 321 ntBASIC13.17□□□□□ -0.3
RNF4P78317 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC13.17□□□□□ -0.3
RNF4P78317 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC13.17□□□□□ -0.3
RNF4P78317 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC13.17□□□□□ -0.3
RNF4P78317 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC13.17□□□□□ -0.3
RNF4P78317 AC007718.1-201ENST00000621078 280 ntBASIC13.17□□□□□ -0.3
RNF4P78317 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
RNF4P78317 AC117489.1-201ENST00000625169 3217 ntBASIC13.17□□□□□ -0.3
RNF4P78317 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC13.17□□□□□ -0.3
RNF4P78317 AMT-256ENST00000638063 1783 ntTSL 5 BASIC13.17□□□□□ -0.3
RNF4P78317 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 USP39-220ENST00000613444 2161 ntTSL 2 BASIC13.17□□□□□ -0.3
RNF4P78317 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
RNF4P78317 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.17□□□□□ -0.3
RNF4P78317 AC090643.2-201ENST00000623442 2029 ntBASIC13.17□□□□□ -0.3
RNF4P78317 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
RNF4P78317 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
RNF4P78317 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.16□□□□□ -0.3
RNF4P78317 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
RNF4P78317 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC13.16□□□□□ -0.3
RNF4P78317 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
RNF4P78317 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC13.16□□□□□ -0.3
RNF4P78317 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC13.16□□□□□ -0.3
RNF4P78317 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.16□□□□□ -0.3
RNF4P78317 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
RNF4P78317 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
RNF4P78317 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
RNF4P78317 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 MIR557-201ENST00000385239 98 ntBASIC13.16□□□□□ -0.3
RNF4P78317 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC13.16□□□□□ -0.3
RNF4P78317 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC13.16□□□□□ -0.3
RNF4P78317 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC13.16□□□□□ -0.3
RNF4P78317 GOLGA2P8-201ENST00000505201 779 ntBASIC13.16□□□□□ -0.3
RNF4P78317 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC13.16□□□□□ -0.3
RNF4P78317 RHOQP1-201ENST00000555758 579 ntBASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms