Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 AC026748.1-201ENST00000624349 3251 ntBASIC12.67□□□□□ -0.38
GFRA1P56159 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC12.67□□□□□ -0.38
GFRA1P56159 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC12.67□□□□□ -0.38
GFRA1P56159 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC12.67□□□□□ -0.38
GFRA1P56159 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 HLA-DPB2-205ENST00000435074 1188 ntBASIC12.67□□□□□ -0.38
GFRA1P56159 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC12.67□□□□□ -0.38
GFRA1P56159 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC12.67□□□□□ -0.38
GFRA1P56159 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC12.67□□□□□ -0.38
GFRA1P56159 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC12.67□□□□□ -0.38
GFRA1P56159 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC12.67□□□□□ -0.38
GFRA1P56159 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC12.67□□□□□ -0.38
GFRA1P56159 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC12.67□□□□□ -0.38
GFRA1P56159 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC12.67□□□□□ -0.38
GFRA1P56159 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC12.67□□□□□ -0.38
GFRA1P56159 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC12.67□□□□□ -0.38
GFRA1P56159 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC12.67□□□□□ -0.38
GFRA1P56159 AC087045.2-201ENST00000606279 1003 ntBASIC12.67□□□□□ -0.38
GFRA1P56159 MIR6842-201ENST00000612539 65 ntBASIC12.67□□□□□ -0.38
GFRA1P56159 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC12.67□□□□□ -0.38
GFRA1P56159 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC12.67□□□□□ -0.38
GFRA1P56159 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC12.67□□□□□ -0.38
GFRA1P56159 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC12.67□□□□□ -0.38
GFRA1P56159 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC12.67□□□□□ -0.38
GFRA1P56159 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC12.67□□□□□ -0.38
GFRA1P56159 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC12.67□□□□□ -0.38
GFRA1P56159 BANP-203ENST00000393207 2438 ntTSL 2 BASIC12.67□□□□□ -0.38
GFRA1P56159 LINC02486-201ENST00000604157 3000 ntBASIC12.67□□□□□ -0.38
GFRA1P56159 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
GFRA1P56159 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
GFRA1P56159 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC12.66□□□□□ -0.38
GFRA1P56159 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC12.66□□□□□ -0.38
GFRA1P56159 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC12.66□□□□□ -0.38
GFRA1P56159 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC12.66□□□□□ -0.38
GFRA1P56159 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC12.66□□□□□ -0.38
GFRA1P56159 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
GFRA1P56159 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
GFRA1P56159 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
GFRA1P56159 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
GFRA1P56159 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
GFRA1P56159 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
GFRA1P56159 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
GFRA1P56159 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC12.66□□□□□ -0.38
GFRA1P56159 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
GFRA1P56159 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
GFRA1P56159 TBC1D27-202ENST00000424239 1573 ntBASIC12.66□□□□□ -0.38
GFRA1P56159 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
GFRA1P56159 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
GFRA1P56159 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
GFRA1P56159 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
GFRA1P56159 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC12.66□□□□□ -0.38
GFRA1P56159 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC12.66□□□□□ -0.38
GFRA1P56159 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC12.66□□□□□ -0.38
GFRA1P56159 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC12.66□□□□□ -0.38
GFRA1P56159 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC12.66□□□□□ -0.38
GFRA1P56159 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC12.66□□□□□ -0.38
GFRA1P56159 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC12.66□□□□□ -0.38
GFRA1P56159 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
GFRA1P56159 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC12.66□□□□□ -0.38
GFRA1P56159 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
GFRA1P56159 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
GFRA1P56159 OR5BD1P-201ENST00000532527 817 ntBASIC12.66□□□□□ -0.38
GFRA1P56159 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC12.66□□□□□ -0.38
GFRA1P56159 HERC2P11-201ENST00000562845 725 ntBASIC12.66□□□□□ -0.38
GFRA1P56159 DNM1P30-201ENST00000563586 452 ntBASIC12.66□□□□□ -0.38
GFRA1P56159 AC100756.2-201ENST00000569537 736 ntBASIC12.66□□□□□ -0.38
GFRA1P56159 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC12.66□□□□□ -0.38
GFRA1P56159 SPCS2P2-201ENST00000603270 608 ntBASIC12.66□□□□□ -0.38
GFRA1P56159 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
GFRA1P56159 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC12.66□□□□□ -0.38
GFRA1P56159 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC12.66□□□□□ -0.38
GFRA1P56159 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
GFRA1P56159 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC12.66□□□□□ -0.38
GFRA1P56159 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms