Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
FOXA1P55317 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
FOXA1P55317 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC13.76□□□□□ -0.21
FOXA1P55317 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC13.76□□□□□ -0.21
FOXA1P55317 AC018629.1-201ENST00000623381 1736 ntBASIC13.76□□□□□ -0.21
FOXA1P55317 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.21
FOXA1P55317 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA1P55317 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC13.76□□□□□ -0.21
FOXA1P55317 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC13.76□□□□□ -0.21
FOXA1P55317 PLAT-201ENST00000220809 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA1P55317 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA1P55317 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
FOXA1P55317 JTB-202ENST00000356648 1040 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA1P55317 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
FOXA1P55317 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA1P55317 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
FOXA1P55317 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC13.76□□□□□ -0.21
FOXA1P55317 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC13.76□□□□□ -0.21
FOXA1P55317 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 AC079316.1-201ENST00000548397 411 ntBASIC13.76□□□□□ -0.21
FOXA1P55317 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA1P55317 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA1P55317 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
FOXA1P55317 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
FOXA1P55317 PFAS-212ENST00000625942 396 ntTSL 5 BASIC13.76□□□□□ -0.21
FOXA1P55317 AC092299.1-201ENST00000632679 757 ntBASIC13.76□□□□□ -0.21
FOXA1P55317 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC13.76□□□□□ -0.21
FOXA1P55317 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 AC105233.6-201ENST00000642093 218 ntBASIC13.76□□□□□ -0.21
FOXA1P55317 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
FOXA1P55317 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
FOXA1P55317 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC13.76□□□□□ -0.21
FOXA1P55317 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC13.76□□□□□ -0.21
FOXA1P55317 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
FOXA1P55317 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
FOXA1P55317 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA1P55317 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 STK26-204ENST00000481105 1835 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA1P55317 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA1P55317 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 NPTN-201ENST00000345330 2444 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC13.75□□□□□ -0.21
FOXA1P55317 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
FOXA1P55317 PHB-210ENST00000511832 1509 ntTSL 2 BASIC13.75□□□□□ -0.21
FOXA1P55317 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.75□□□□□ -0.21
FOXA1P55317 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 AL590824.1-201ENST00000403828 1349 ntBASIC13.75□□□□□ -0.21
FOXA1P55317 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
FOXA1P55317 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC13.75□□□□□ -0.21
FOXA1P55317 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
FOXA1P55317 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 OLR1-203ENST00000432556 950 ntTSL 2 BASIC13.75□□□□□ -0.21
FOXA1P55317 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC13.75□□□□□ -0.21
FOXA1P55317 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
FOXA1P55317 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC13.75□□□□□ -0.21
FOXA1P55317 SCARNA21-201ENST00000517026 139 ntBASIC13.75□□□□□ -0.21
FOXA1P55317 ACR-203ENST00000529621 708 ntTSL 5 BASIC13.75□□□□□ -0.21
FOXA1P55317 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC13.75□□□□□ -0.21
FOXA1P55317 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
FOXA1P55317 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC13.75□□□□□ -0.21
FOXA1P55317 AC140658.4-201ENST00000561990 352 ntBASIC13.75□□□□□ -0.21
FOXA1P55317 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC13.75□□□□□ -0.21
FOXA1P55317 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
FOXA1P55317 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC13.75□□□□□ -0.21
FOXA1P55317 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms