Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 AC011840.2-201ENST00000563063 1520 ntBASIC11.91□□□□□ -0.5
HOXA1P49639 G2E3-202ENST00000438909 2334 ntTSL 2 BASIC11.91□□□□□ -0.5
HOXA1P49639 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
HOXA1P49639 HYOU1-217ENST00000612687 4360 ntTSL 5 BASIC11.9□□□□□ -0.5
HOXA1P49639 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 MALL-201ENST00000272462 3061 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC11.9□□□□□ -0.5
HOXA1P49639 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
HOXA1P49639 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 MYRF-202ENST00000278836 5927 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 DACH2-201ENST00000373125 2232 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC11.9□□□□□ -0.5
HOXA1P49639 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC11.9□□□□□ -0.5
HOXA1P49639 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
HOXA1P49639 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
HOXA1P49639 TEX30-203ENST00000376022 828 ntTSL 2 BASIC11.9□□□□□ -0.5
HOXA1P49639 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
HOXA1P49639 OSM-203ENST00000403463 464 ntTSL 3 BASIC11.9□□□□□ -0.5
HOXA1P49639 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC11.9□□□□□ -0.5
HOXA1P49639 MEP1AP4-201ENST00000423244 1087 ntBASIC11.9□□□□□ -0.5
HOXA1P49639 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC11.9□□□□□ -0.5
HOXA1P49639 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
HOXA1P49639 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 AC023310.3-201ENST00000557027 670 ntBASIC11.9□□□□□ -0.5
HOXA1P49639 AC100756.1-201ENST00000562736 682 ntBASIC11.9□□□□□ -0.5
HOXA1P49639 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC11.9□□□□□ -0.5
HOXA1P49639 AC138749.3-201ENST00000567691 622 ntBASIC11.9□□□□□ -0.5
HOXA1P49639 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC11.9□□□□□ -0.5
HOXA1P49639 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC11.9□□□□□ -0.5
HOXA1P49639 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC11.9□□□□□ -0.5
HOXA1P49639 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC11.9□□□□□ -0.5
HOXA1P49639 AC116165.1-201ENST00000611806 668 ntBASIC11.9□□□□□ -0.5
HOXA1P49639 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC11.9□□□□□ -0.5
HOXA1P49639 HFE2-206ENST00000634927 506 ntTSL 4 BASIC11.9□□□□□ -0.5
HOXA1P49639 SOGA1-201ENST00000237536 14371 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
HOXA1P49639 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC11.9□□□□□ -0.5
HOXA1P49639 P2RY8-201ENST00000381297 4198 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 ZDHHC7-201ENST00000313732 3442 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 MAX-212ENST00000555932 1673 ntTSL 5 BASIC11.9□□□□□ -0.5
HOXA1P49639 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 GNPDA1-210ENST00000508177 2980 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
HOXA1P49639 SPATA2-202ENST00000422556 4138 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
HOXA1P49639 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC11.9□□□□□ -0.5
HOXA1P49639 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
HOXA1P49639 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.51
HOXA1P49639 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC11.9□□□□□ -0.51
HOXA1P49639 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 AC026797.1-201ENST00000624837 2869 ntBASIC11.89□□□□□ -0.51
HOXA1P49639 IFT122-204ENST00000349441 3569 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 TRPM2-203ENST00000397928 6221 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 USO1-201ENST00000264904 4135 ntTSL 2 BASIC11.89□□□□□ -0.51
HOXA1P49639 SLC13A2-201ENST00000314669 2711 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
HOXA1P49639 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
HOXA1P49639 MRPL37P1-201ENST00000592451 1337 ntBASIC11.89□□□□□ -0.51
HOXA1P49639 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 CCDC148-201ENST00000283233 3122 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 SP7-201ENST00000303846 2971 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC11.89□□□□□ -0.51
HOXA1P49639 CACNA1G-219ENST00000507609 6849 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC11.89□□□□□ -0.51
HOXA1P49639 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
HOXA1P49639 PLCB3-201ENST00000279230 4197 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 RBP3-201ENST00000584701 4276 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 SOCS2P1-201ENST00000417727 557 ntBASIC11.89□□□□□ -0.51
HOXA1P49639 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC11.89□□□□□ -0.51
HOXA1P49639 AC114812.1-204ENST00000449669 728 ntBASIC11.89□□□□□ -0.51
HOXA1P49639 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC11.89□□□□□ -0.51
HOXA1P49639 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC11.89□□□□□ -0.51
HOXA1P49639 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC11.89□□□□□ -0.51
HOXA1P49639 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC11.89□□□□□ -0.51
HOXA1P49639 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 DUX4L27-201ENST00000554796 1261 ntBASIC11.89□□□□□ -0.51
HOXA1P49639 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC11.89□□□□□ -0.51
HOXA1P49639 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HOXA1P49639 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC11.89□□□□□ -0.51
HOXA1P49639 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC11.89□□□□□ -0.51
HOXA1P49639 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC11.89□□□□□ -0.51
HOXA1P49639 POTEI-203ENST00000631234 2072 ntTSL 2 BASIC11.89□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms