Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL133467.4-201ENST00000602953 725 ntBASIC12.42□□□□□ -0.42
COL8A1P27658 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC12.42□□□□□ -0.42
COL8A1P27658 COQ4-204ENST00000608951 781 ntTSL 2 BASIC12.42□□□□□ -0.42
COL8A1P27658 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC12.42□□□□□ -0.42
COL8A1P27658 PSME2-217ENST00000615264 874 ntTSL 5 BASIC12.42□□□□□ -0.42
COL8A1P27658 PSME2-218ENST00000630027 185 ntTSL 3 BASIC12.42□□□□□ -0.42
COL8A1P27658 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC12.42□□□□□ -0.42
COL8A1P27658 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
COL8A1P27658 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC12.42□□□□□ -0.42
COL8A1P27658 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC12.42□□□□□ -0.42
COL8A1P27658 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC12.42□□□□□ -0.42
COL8A1P27658 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC12.41□□□□□ -0.42
COL8A1P27658 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC12.41□□□□□ -0.42
COL8A1P27658 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC12.41□□□□□ -0.42
COL8A1P27658 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC12.41□□□□□ -0.42
COL8A1P27658 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 FAM45BP-202ENST00000592932 1624 ntBASIC12.41□□□□□ -0.42
COL8A1P27658 AL137077.2-201ENST00000635124 1608 ntBASIC12.41□□□□□ -0.42
COL8A1P27658 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
COL8A1P27658 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC12.41□□□□□ -0.42
COL8A1P27658 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC12.41□□□□□ -0.42
COL8A1P27658 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
COL8A1P27658 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
COL8A1P27658 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 OR10N1P-201ENST00000392758 869 ntBASIC12.41□□□□□ -0.42
COL8A1P27658 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC12.41□□□□□ -0.42
COL8A1P27658 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
COL8A1P27658 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
COL8A1P27658 AC092903.1-201ENST00000466506 262 ntBASIC12.41□□□□□ -0.42
COL8A1P27658 RN7SL147P-201ENST00000487345 298 ntBASIC12.41□□□□□ -0.42
COL8A1P27658 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC12.41□□□□□ -0.42
COL8A1P27658 BCRP4-201ENST00000506079 804 ntBASIC12.41□□□□□ -0.42
COL8A1P27658 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC12.41□□□□□ -0.42
COL8A1P27658 IGHVIII-5-2-201ENST00000522505 261 ntBASIC12.41□□□□□ -0.42
COL8A1P27658 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC12.41□□□□□ -0.42
COL8A1P27658 URB1-AS1-201ENST00000534991 831 ntBASIC12.41□□□□□ -0.42
COL8A1P27658 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC12.41□□□□□ -0.42
COL8A1P27658 SRP14-208ENST00000560773 468 ntTSL 3 BASIC12.41□□□□□ -0.42
COL8A1P27658 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC12.41□□□□□ -0.42
COL8A1P27658 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC12.41□□□□□ -0.42
COL8A1P27658 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC12.41□□□□□ -0.42
COL8A1P27658 AL450487.2-201ENST00000615934 407 ntBASIC12.41□□□□□ -0.42
COL8A1P27658 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC12.41□□□□□ -0.42
COL8A1P27658 AC020922.4-201ENST00000621389 339 ntBASIC12.41□□□□□ -0.42
COL8A1P27658 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC12.41□□□□□ -0.42
COL8A1P27658 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 AL009178.2-201ENST00000597278 2719 ntBASIC12.41□□□□□ -0.42
COL8A1P27658 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC12.41□□□□□ -0.42
COL8A1P27658 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC12.41□□□□□ -0.42
COL8A1P27658 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC12.41□□□□□ -0.42
COL8A1P27658 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC12.41□□□□□ -0.42
COL8A1P27658 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC12.41□□□□□ -0.42
COL8A1P27658 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC12.41□□□□□ -0.42
COL8A1P27658 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC12.41□□□□□ -0.42
COL8A1P27658 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 KRT8P28-201ENST00000433288 1390 ntBASIC12.41□□□□□ -0.42
COL8A1P27658 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC12.41□□□□□ -0.42
COL8A1P27658 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
COL8A1P27658 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC12.41□□□□□ -0.42
COL8A1P27658 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
COL8A1P27658 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC12.41□□□□□ -0.42
COL8A1P27658 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL8A1P27658 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC12.4□□□□□ -0.42
COL8A1P27658 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
COL8A1P27658 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC12.4□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms