Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CLRN1P58418 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
CLRN1P58418 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CLRN1P58418 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC12.77□□□□□ -0.37
CLRN1P58418 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CLRN1P58418 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CLRN1P58418 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CLRN1P58418 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC12.77□□□□□ -0.37
CLRN1P58418 CACNA1G-228ENST00000514079 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CLRN1P58418 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
CLRN1P58418 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CLRN1P58418 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CLRN1P58418 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CLRN1P58418 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CLRN1P58418 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CLRN1P58418 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CLRN1P58418 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 AC004899.1-201ENST00000424687 1714 ntBASIC12.76□□□□□ -0.37
CLRN1P58418 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
CLRN1P58418 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
CLRN1P58418 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC12.76□□□□□ -0.37
CLRN1P58418 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 AL731571.1-201ENST00000617058 5428 ntBASIC12.76□□□□□ -0.37
CLRN1P58418 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
CLRN1P58418 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC12.76□□□□□ -0.37
CLRN1P58418 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC12.76□□□□□ -0.37
CLRN1P58418 POM121L10P-201ENST00000436994 1285 ntBASIC12.76□□□□□ -0.37
CLRN1P58418 GOLGA2P4-201ENST00000441462 777 ntBASIC12.76□□□□□ -0.37
CLRN1P58418 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC12.76□□□□□ -0.37
CLRN1P58418 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC12.76□□□□□ -0.37
CLRN1P58418 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 NOP2-220ENST00000545915 630 ntTSL 2 BASIC12.76□□□□□ -0.37
CLRN1P58418 AL512310.5-201ENST00000551999 515 ntBASIC12.76□□□□□ -0.37
CLRN1P58418 AL583810.1-201ENST00000553344 1045 ntBASIC12.76□□□□□ -0.37
CLRN1P58418 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC12.76□□□□□ -0.37
CLRN1P58418 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 TECR-220ENST00000600083 1204 ntTSL 2 BASIC12.76□□□□□ -0.37
CLRN1P58418 AP000346.4-201ENST00000614827 381 ntBASIC12.76□□□□□ -0.37
CLRN1P58418 AC092299.1-201ENST00000632679 757 ntBASIC12.76□□□□□ -0.37
CLRN1P58418 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC12.76□□□□□ -0.37
CLRN1P58418 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC12.76□□□□□ -0.37
CLRN1P58418 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 AL590824.1-201ENST00000403828 1349 ntBASIC12.76□□□□□ -0.37
CLRN1P58418 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC12.76□□□□□ -0.37
CLRN1P58418 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC12.76□□□□□ -0.37
CLRN1P58418 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
CLRN1P58418 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC12.76□□□□□ -0.37
CLRN1P58418 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC12.76□□□□□ -0.37
CLRN1P58418 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC12.76□□□□□ -0.37
CLRN1P58418 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
CLRN1P58418 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC12.76□□□□□ -0.37
CLRN1P58418 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
CLRN1P58418 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CLRN1P58418 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CLRN1P58418 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC12.75□□□□□ -0.37
CLRN1P58418 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
CLRN1P58418 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CLRN1P58418 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC12.75□□□□□ -0.37
CLRN1P58418 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC12.75□□□□□ -0.37
CLRN1P58418 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
CLRN1P58418 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC12.75□□□□□ -0.37
CLRN1P58418 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
CLRN1P58418 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 SCN8A-202ENST00000355133 5820 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC12.75□□□□□ -0.37
CLRN1P58418 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC12.75□□□□□ -0.37
CLRN1P58418 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms