Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC008038.1-201ENST00000634247 1314 ntBASIC16.15■□□□□ 0.18
SCN4AP35499 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SCN4AP35499 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SCN4AP35499 AL513497.1-201ENST00000624273 2083 ntBASIC16.15■□□□□ 0.18
SCN4AP35499 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SCN4AP35499 SNORA30.1-201ENST00000363193 129 ntBASIC16.15■□□□□ 0.18
SCN4AP35499 TRBV20OR9-2-201ENST00000379435 416 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
SCN4AP35499 AC012513.2-201ENST00000441511 1137 ntBASIC16.15■□□□□ 0.18
SCN4AP35499 TULP3P1-202ENST00000453253 1291 ntBASIC16.15■□□□□ 0.18
SCN4AP35499 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.15■□□□□ 0.18
SCN4AP35499 CXXC1P1-202ENST00000489409 1212 ntBASIC16.15■□□□□ 0.18
SCN4AP35499 AC139887.2-201ENST00000503571 531 ntTSL 4 BASIC16.15■□□□□ 0.18
SCN4AP35499 DIS3L2P1-201ENST00000509197 559 ntBASIC16.15■□□□□ 0.18
SCN4AP35499 NEMF-210ENST00000556672 590 ntTSL 2 BASIC16.15■□□□□ 0.18
SCN4AP35499 Z92544.2-202ENST00000566927 407 ntTSL 3 BASIC16.15■□□□□ 0.18
SCN4AP35499 BMS1P8-203ENST00000567036 614 ntTSL 3 BASIC16.15■□□□□ 0.18
SCN4AP35499 AJ011931.1-201ENST00000618749 2492 ntBASIC16.15■□□□□ 0.18
SCN4AP35499 MIR6819-201ENST00000622122 61 ntBASIC16.15■□□□□ 0.18
SCN4AP35499 AC010601.2-201ENST00000623060 774 ntBASIC16.15■□□□□ 0.18
SCN4AP35499 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SCN4AP35499 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC16.15■□□□□ 0.18
SCN4AP35499 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SCN4AP35499 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SCN4AP35499 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SCN4AP35499 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.15■□□□□ 0.18
SCN4AP35499 AC034205.3-201ENST00000603595 1376 ntBASIC16.15■□□□□ 0.18
SCN4AP35499 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SCN4AP35499 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.15■□□□□ 0.18
SCN4AP35499 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.15■□□□□ 0.18
SCN4AP35499 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC16.15■□□□□ 0.18
SCN4AP35499 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
SCN4AP35499 TRIML2-207ENST00000512729 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SCN4AP35499 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
SCN4AP35499 AF013593.1-201ENST00000458074 1487 ntBASIC16.15■□□□□ 0.18
SCN4AP35499 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SCN4AP35499 BCKDHA-202ENST00000457836 1745 ntTSL 2 BASIC16.15■□□□□ 0.18
SCN4AP35499 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
SCN4AP35499 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SCN4AP35499 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SCN4AP35499 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC16.15■□□□□ 0.18
SCN4AP35499 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SCN4AP35499 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SCN4AP35499 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SCN4AP35499 SOD1-202ENST00000389995 865 ntTSL 3 BASIC16.15■□□□□ 0.18
SCN4AP35499 AL512328.1-203ENST00000428480 673 ntTSL 5 BASIC16.15■□□□□ 0.18
SCN4AP35499 AC005042.2-201ENST00000449526 510 ntTSL 4 BASIC16.15■□□□□ 0.18
SCN4AP35499 SMCO4-202ENST00000525141 889 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SCN4AP35499 AC136698.1-201ENST00000558110 546 ntTSL 4 BASIC16.15■□□□□ 0.18
SCN4AP35499 AC048382.4-201ENST00000559065 546 ntTSL 4 BASIC16.15■□□□□ 0.18
SCN4AP35499 FAM69A-204ENST00000615519 865 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SCN4AP35499 MIEF1-215ENST00000637854 213 ntBASIC16.15■□□□□ 0.18
SCN4AP35499 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SCN4AP35499 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
SCN4AP35499 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SCN4AP35499 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 FMO6P-201ENST00000236166 1620 ntBASIC16.14■□□□□ 0.17
SCN4AP35499 AC011239.2-201ENST00000624820 1489 ntBASIC16.14■□□□□ 0.17
SCN4AP35499 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.14■□□□□ 0.17
SCN4AP35499 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC16.14■□□□□ 0.17
SCN4AP35499 ATP6V0D1-218ENST00000602876 1554 ntTSL 5 BASIC16.14■□□□□ 0.17
SCN4AP35499 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
SCN4AP35499 OR2V2-201ENST00000328275 948 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
SCN4AP35499 BNIP1-202ENST00000351486 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 MUC1-207ENST00000368392 1032 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 MUC1-208ENST00000368393 937 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 LY6G6F-201ENST00000375832 920 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 CA6-201ENST00000377436 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 CA6-202ENST00000377442 747 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 PDLIM2-212ENST00000443561 701 ntTSL 2 BASIC16.14■□□□□ 0.17
SCN4AP35499 MUC1-213ENST00000462215 1189 ntTSL 2 BASIC16.14■□□□□ 0.17
SCN4AP35499 RN7SL789P-201ENST00000478944 293 ntBASIC16.14■□□□□ 0.17
SCN4AP35499 AC027279.2-201ENST00000561938 793 ntTSL 5 BASIC16.14■□□□□ 0.17
SCN4AP35499 SMIM22-207ENST00000589721 822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 AL356740.1-201ENST00000602192 1297 ntBASIC16.14■□□□□ 0.17
SCN4AP35499 AC136475.9-201ENST00000605240 497 ntBASIC16.14■□□□□ 0.17
SCN4AP35499 LINC02427-202ENST00000605270 1059 ntTSL 2 BASIC16.14■□□□□ 0.17
SCN4AP35499 AC099552.4-201ENST00000624248 949 ntBASIC16.14■□□□□ 0.17
SCN4AP35499 AL807742.1-201ENST00000636678 1160 ntTSL 5 BASIC16.14■□□□□ 0.17
SCN4AP35499 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 ADCK1-201ENST00000238561 2234 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.14■□□□□ 0.17
SCN4AP35499 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 LINC01137-201ENST00000424989 1395 ntTSL 2 BASIC16.14■□□□□ 0.17
SCN4AP35499 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
SCN4AP35499 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SCN4AP35499 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
SCN4AP35499 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 CHCHD7-218ENST00000523975 1805 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SCN4AP35499 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.14■□□□□ 0.17
SCN4AP35499 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SCN4AP35499 STK25-235ENST00000543554 2556 ntTSL 2 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms