Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC14.55□□□□□ -0.08
HMGA1P17096 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC14.55□□□□□ -0.08
HMGA1P17096 AL139424.3-202ENST00000641619 917 ntBASIC14.55□□□□□ -0.08
HMGA1P17096 AC002472.4-201ENST00000641915 272 ntBASIC14.55□□□□□ -0.08
HMGA1P17096 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC14.55□□□□□ -0.08
HMGA1P17096 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
HMGA1P17096 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
HMGA1P17096 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
HMGA1P17096 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC14.55□□□□□ -0.08
HMGA1P17096 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC14.55□□□□□ -0.08
HMGA1P17096 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
HMGA1P17096 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
HMGA1P17096 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
HMGA1P17096 AL928654.5-201ENST00000624831 2501 ntBASIC14.54□□□□□ -0.08
HMGA1P17096 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGA1P17096 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.54□□□□□ -0.08
HMGA1P17096 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
HMGA1P17096 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
HMGA1P17096 SSR4-202ENST00000370085 526 ntTSL 2 BASIC14.54□□□□□ -0.08
HMGA1P17096 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HMGA1P17096 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HMGA1P17096 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC14.54□□□□□ -0.08
HMGA1P17096 DKKL1P1-201ENST00000400550 698 ntBASIC14.54□□□□□ -0.08
HMGA1P17096 GGTLC4P-201ENST00000402176 664 ntBASIC14.54□□□□□ -0.08
HMGA1P17096 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
HMGA1P17096 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC14.54□□□□□ -0.08
HMGA1P17096 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC14.54□□□□□ -0.08
HMGA1P17096 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
HMGA1P17096 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HMGA1P17096 KRT18P37-201ENST00000520711 1282 ntBASIC14.54□□□□□ -0.08
HMGA1P17096 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC14.54□□□□□ -0.08
HMGA1P17096 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC14.54□□□□□ -0.08
HMGA1P17096 DLK1-205ENST00000556051 469 ntTSL 2 BASIC14.54□□□□□ -0.08
HMGA1P17096 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGA1P17096 AC010976.2-201ENST00000609697 852 ntBASIC14.54□□□□□ -0.08
HMGA1P17096 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGA1P17096 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGA1P17096 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC14.54□□□□□ -0.08
HMGA1P17096 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
HMGA1P17096 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGA1P17096 AL672207.1-201ENST00000328462 1570 ntBASIC14.54□□□□□ -0.08
HMGA1P17096 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HMGA1P17096 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC14.54□□□□□ -0.08
HMGA1P17096 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGA1P17096 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC14.54□□□□□ -0.08
HMGA1P17096 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HMGA1P17096 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC14.54□□□□□ -0.08
HMGA1P17096 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGA1P17096 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC14.54□□□□□ -0.08
HMGA1P17096 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGA1P17096 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGA1P17096 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
HMGA1P17096 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
HMGA1P17096 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HMGA1P17096 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
HMGA1P17096 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
HMGA1P17096 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
HMGA1P17096 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.53□□□□□ -0.08
HMGA1P17096 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
HMGA1P17096 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
HMGA1P17096 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC14.53□□□□□ -0.08
HMGA1P17096 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 FMO6P-201ENST00000236166 1620 ntBASIC14.53□□□□□ -0.08
HMGA1P17096 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC14.53□□□□□ -0.08
HMGA1P17096 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
HMGA1P17096 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC14.53□□□□□ -0.08
HMGA1P17096 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
HMGA1P17096 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
HMGA1P17096 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC14.53□□□□□ -0.08
HMGA1P17096 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC14.53□□□□□ -0.08
HMGA1P17096 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 PFN2-212ENST00000490975 858 ntTSL 4 BASIC14.53□□□□□ -0.08
HMGA1P17096 PTK2-225ENST00000520892 571 ntTSL 4 BASIC14.53□□□□□ -0.08
HMGA1P17096 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC14.53□□□□□ -0.08
HMGA1P17096 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 MIR6756-201ENST00000616240 63 ntBASIC14.53□□□□□ -0.08
HMGA1P17096 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC14.53□□□□□ -0.08
HMGA1P17096 AC073592.2-201ENST00000623062 780 ntBASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms