Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 AC135782.3-201ENST00000562782 2105 ntBASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM55Q9BYV6 PCDHB18P-202ENST00000526308 3197 ntBASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 DRD5P1-201ENST00000456605 1438 ntBASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 AC092053.3-201ENST00000641308 4975 ntBASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 RIT1-205ENST00000539040 919 ntTSL 2 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 AC243960.2-201ENST00000600996 747 ntBASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 AC003102.2-201ENST00000589195 1469 ntBASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 KHSRPP1-201ENST00000427983 1768 ntBASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC14.5□□□□□ -0.09
TRIM55Q9BYV6 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.49□□□□□ -0.09
TRIM55Q9BYV6 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM55Q9BYV6 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC14.49□□□□□ -0.09
TRIM55Q9BYV6 AL023775.1-201ENST00000454907 1746 ntBASIC14.49□□□□□ -0.09
TRIM55Q9BYV6 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM55Q9BYV6 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.49□□□□□ -0.09
TRIM55Q9BYV6 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM55Q9BYV6 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
TRIM55Q9BYV6 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM55Q9BYV6 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
TRIM55Q9BYV6 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM55Q9BYV6 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRIM55Q9BYV6 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms