Protein–RNA interactions for Protein: Q92576

PHF3, PHD finger protein 3, humanhuman

Known RBP Predictions only

Length 2,039 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3Q92576 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC12.84□□□□□ -0.35
PHF3Q92576 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC12.84□□□□□ -0.35
PHF3Q92576 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PHF3Q92576 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PHF3Q92576 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PHF3Q92576 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PHF3Q92576 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC12.84□□□□□ -0.35
PHF3Q92576 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
PHF3Q92576 AC111170.3-201ENST00000624282 2464 ntBASIC12.83□□□□□ -0.35
PHF3Q92576 AP002353.1-201ENST00000528257 1599 ntBASIC12.83□□□□□ -0.35
PHF3Q92576 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
PHF3Q92576 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC12.83□□□□□ -0.36
PHF3Q92576 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 AL161932.2-201ENST00000435436 679 ntBASIC12.83□□□□□ -0.36
PHF3Q92576 RPL7P35-201ENST00000446943 740 ntBASIC12.83□□□□□ -0.36
PHF3Q92576 PTK2-225ENST00000520892 571 ntTSL 4 BASIC12.83□□□□□ -0.36
PHF3Q92576 AC140658.4-201ENST00000561990 352 ntBASIC12.83□□□□□ -0.36
PHF3Q92576 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC12.83□□□□□ -0.36
PHF3Q92576 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
PHF3Q92576 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC12.83□□□□□ -0.36
PHF3Q92576 AC084781.1-201ENST00000613737 656 ntBASIC12.83□□□□□ -0.36
PHF3Q92576 WT1-AS_6.1-201ENST00000614919 121 ntBASIC12.83□□□□□ -0.36
PHF3Q92576 AC073911.3-201ENST00000624401 631 ntBASIC12.83□□□□□ -0.36
PHF3Q92576 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC12.83□□□□□ -0.36
PHF3Q92576 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC12.83□□□□□ -0.36
PHF3Q92576 AC005014.1-201ENST00000432006 2976 ntBASIC12.83□□□□□ -0.36
PHF3Q92576 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC12.83□□□□□ -0.36
PHF3Q92576 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC12.83□□□□□ -0.36
PHF3Q92576 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
PHF3Q92576 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
PHF3Q92576 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
PHF3Q92576 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
PHF3Q92576 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
PHF3Q92576 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC12.83□□□□□ -0.36
PHF3Q92576 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
PHF3Q92576 AC090643.2-201ENST00000623442 2029 ntBASIC12.83□□□□□ -0.36
PHF3Q92576 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
PHF3Q92576 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
PHF3Q92576 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
PHF3Q92576 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
PHF3Q92576 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC12.83□□□□□ -0.36
PHF3Q92576 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC12.83□□□□□ -0.36
PHF3Q92576 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC12.83□□□□□ -0.36
PHF3Q92576 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC12.83□□□□□ -0.36
PHF3Q92576 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC12.83□□□□□ -0.36
PHF3Q92576 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC12.83□□□□□ -0.36
PHF3Q92576 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC12.83□□□□□ -0.36
PHF3Q92576 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC12.83□□□□□ -0.36
PHF3Q92576 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC12.83□□□□□ -0.36
PHF3Q92576 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.36
PHF3Q92576 AC090386.2-201ENST00000623010 1039 ntBASIC12.83□□□□□ -0.36
PHF3Q92576 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC12.83□□□□□ -0.36
PHF3Q92576 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC12.83□□□□□ -0.36
PHF3Q92576 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
PHF3Q92576 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
PHF3Q92576 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC12.82□□□□□ -0.36
PHF3Q92576 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC12.82□□□□□ -0.36
PHF3Q92576 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
PHF3Q92576 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
PHF3Q92576 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PHF3Q92576 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC12.82□□□□□ -0.36
PHF3Q92576 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC12.82□□□□□ -0.36
PHF3Q92576 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
PHF3Q92576 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PHF3Q92576 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
PHF3Q92576 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC12.82□□□□□ -0.36
PHF3Q92576 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
PHF3Q92576 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC12.82□□□□□ -0.36
PHF3Q92576 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
PHF3Q92576 DDC-213ENST00000617822 1809 ntTSL 3 BASIC12.82□□□□□ -0.36
PHF3Q92576 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
PHF3Q92576 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
PHF3Q92576 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
PHF3Q92576 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PHF3Q92576 AL359881.3-201ENST00000602640 1721 ntBASIC12.82□□□□□ -0.36
PHF3Q92576 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PHF3Q92576 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PHF3Q92576 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
PHF3Q92576 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms