Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 MIR632-201ENST00000385193 94 ntBASIC11.42□□□□□ -0.58
VPS13CQ709C8 LINC02036-201ENST00000415869 910 ntTSL 3 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 SOX2-OT-203ENST00000466034 926 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 AC104640.1-201ENST00000562617 2109 ntBASIC11.42□□□□□ -0.58
VPS13CQ709C8 AC116914.2-201ENST00000571741 291 ntTSL 5 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 PPY-202ENST00000587006 431 ntTSL 3 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 SOX2-OT-221ENST00000594942 675 ntTSL 5 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 AL137028.2-201ENST00000614601 256 ntBASIC11.42□□□□□ -0.58
VPS13CQ709C8 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 GLDC-216ENST00000639639 1559 ntTSL 3 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 SALL4P6-201ENST00000429385 1691 ntBASIC11.42□□□□□ -0.58
VPS13CQ709C8 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 AC106785.2-201ENST00000564385 1319 ntBASIC11.42□□□□□ -0.58
VPS13CQ709C8 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 POP5-201ENST00000341039 913 ntTSL 2 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 HNRNPABP1-201ENST00000406003 734 ntBASIC11.42□□□□□ -0.58
VPS13CQ709C8 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 AC006547.1-209ENST00000596334 996 ntTSL 5 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
VPS13CQ709C8 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
VPS13CQ709C8 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 CYP4F29P-202ENST00000428301 1279 ntTSL 2 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 ASLP1-201ENST00000428790 637 ntBASIC11.41□□□□□ -0.58
VPS13CQ709C8 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 AC025419.1-201ENST00000537250 690 ntTSL 3 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 DDC-204ENST00000426377 1700 ntTSL 3 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 PIGC-202ENST00000367728 2630 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 MIR611-201ENST00000384869 67 ntBASIC11.41□□□□□ -0.58
VPS13CQ709C8 REG3G-202ENST00000393897 856 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 AL627095.1-201ENST00000414775 321 ntBASIC11.41□□□□□ -0.58
VPS13CQ709C8 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 GULOP-201ENST00000454030 748 ntBASIC11.41□□□□□ -0.58
VPS13CQ709C8 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 AC005332.2-201ENST00000590010 930 ntBASIC11.41□□□□□ -0.58
VPS13CQ709C8 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 MIEF1-215ENST00000637854 213 ntBASIC11.41□□□□□ -0.58
VPS13CQ709C8 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 STK16-202ENST00000409260 1493 ntTSL 5 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms