Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.17■□□□□ 0.34
NUP98P52948 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NUP98P52948 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NUP98P52948 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
NUP98P52948 AC040160.2-201ENST00000623816 1675 ntBASIC17.17■□□□□ 0.34
NUP98P52948 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
NUP98P52948 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NUP98P52948 BCL2L12P1-201ENST00000508390 733 ntBASIC17.17■□□□□ 0.34
NUP98P52948 AC092612.1-201ENST00000514501 998 ntBASIC17.17■□□□□ 0.34
NUP98P52948 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC17.17■□□□□ 0.34
NUP98P52948 AC004801.1-201ENST00000549557 360 ntBASIC17.17■□□□□ 0.34
NUP98P52948 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
NUP98P52948 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC17.17■□□□□ 0.34
NUP98P52948 PLS3-210ENST00000626746 216 ntTSL 4 BASIC17.17■□□□□ 0.34
NUP98P52948 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC17.16■□□□□ 0.34
NUP98P52948 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
NUP98P52948 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
NUP98P52948 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NUP98P52948 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
NUP98P52948 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
NUP98P52948 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC17.16■□□□□ 0.34
NUP98P52948 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NUP98P52948 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
NUP98P52948 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC17.16■□□□□ 0.34
NUP98P52948 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
NUP98P52948 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NUP98P52948 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC17.16■□□□□ 0.34
NUP98P52948 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
NUP98P52948 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NUP98P52948 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
NUP98P52948 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
NUP98P52948 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
NUP98P52948 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NUP98P52948 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
NUP98P52948 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
NUP98P52948 RN7SL684P-201ENST00000465665 294 ntBASIC17.16■□□□□ 0.34
NUP98P52948 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC17.16■□□□□ 0.34
NUP98P52948 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC17.16■□□□□ 0.34
NUP98P52948 AC090282.1-201ENST00000572821 534 ntTSL 3 BASIC17.16■□□□□ 0.34
NUP98P52948 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC17.16■□□□□ 0.34
NUP98P52948 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC17.16■□□□□ 0.34
NUP98P52948 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC17.16■□□□□ 0.34
NUP98P52948 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NUP98P52948 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NUP98P52948 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NUP98P52948 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
NUP98P52948 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
NUP98P52948 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
NUP98P52948 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NUP98P52948 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
NUP98P52948 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NUP98P52948 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC17.15■□□□□ 0.34
NUP98P52948 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
NUP98P52948 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC17.15■□□□□ 0.34
NUP98P52948 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NUP98P52948 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
NUP98P52948 AC011477.7-201ENST00000617163 1440 ntBASIC17.15■□□□□ 0.34
NUP98P52948 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NUP98P52948 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NUP98P52948 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NUP98P52948 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NUP98P52948 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
NUP98P52948 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NUP98P52948 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC17.15■□□□□ 0.34
NUP98P52948 VENTXP4-201ENST00000449029 958 ntBASIC17.15■□□□□ 0.34
NUP98P52948 HIST1H2APS2-201ENST00000454426 370 ntBASIC17.15■□□□□ 0.34
NUP98P52948 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC17.15■□□□□ 0.34
NUP98P52948 OR4A49P-201ENST00000527050 632 ntBASIC17.15■□□□□ 0.34
NUP98P52948 SAA2-206ENST00000530400 323 ntTSL 3 BASIC17.15■□□□□ 0.34
NUP98P52948 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC17.15■□□□□ 0.34
NUP98P52948 AC018846.1-201ENST00000568231 183 ntBASIC17.15■□□□□ 0.34
NUP98P52948 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC17.15■□□□□ 0.34
NUP98P52948 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC17.15■□□□□ 0.34
NUP98P52948 AC018695.6-201ENST00000614011 534 ntBASIC17.15■□□□□ 0.34
NUP98P52948 AP001527.2-201ENST00000614441 631 ntBASIC17.15■□□□□ 0.34
NUP98P52948 AC011462.4-201ENST00000616866 449 ntBASIC17.15■□□□□ 0.34
NUP98P52948 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NUP98P52948 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NUP98P52948 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC17.15■□□□□ 0.34
NUP98P52948 DDC-212ENST00000615193 1674 ntTSL 3 BASIC17.15■□□□□ 0.34
NUP98P52948 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
NUP98P52948 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
NUP98P52948 GUCY2EP-203ENST00000531117 1918 ntBASIC17.15■□□□□ 0.34
NUP98P52948 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC17.15■□□□□ 0.34
NUP98P52948 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NUP98P52948 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC17.15■□□□□ 0.34
NUP98P52948 LILRP2-202ENST00000413572 1383 ntBASIC17.15■□□□□ 0.34
NUP98P52948 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NUP98P52948 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NUP98P52948 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
NUP98P52948 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
NUP98P52948 TREX1-203ENST00000456089 629 ntTSL 3 BASIC17.14■□□□□ 0.34
NUP98P52948 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC17.14■□□□□ 0.34
NUP98P52948 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC17.14■□□□□ 0.34
NUP98P52948 MEP1AP1-201ENST00000636082 1097 ntBASIC17.14■□□□□ 0.34
NUP98P52948 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
NUP98P52948 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NUP98P52948 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
NUP98P52948 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP98P52948 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms