Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TUBGCP5-208ENST00000620435 3342 ntTSL 2 BASIC15.12■□□□□ 0.01
LIG3P49916 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
LIG3P49916 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC15.12■□□□□ 0.01
LIG3P49916 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
LIG3P49916 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 LILRP1-201ENST00000444199 1370 ntBASIC15.11■□□□□ 0.01
LIG3P49916 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
LIG3P49916 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
LIG3P49916 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC15.11■□□□□ 0.01
LIG3P49916 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
LIG3P49916 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC15.11■□□□□ 0.01
LIG3P49916 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC15.11■□□□□ 0.01
LIG3P49916 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC15.11■□□□□ 0.01
LIG3P49916 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
LIG3P49916 IMMT-204ENST00000410111 3001 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC15.11■□□□□ 0.01
LIG3P49916 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC15.11■□□□□ 0.01
LIG3P49916 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC15.11■□□□□ 0.01
LIG3P49916 PFN2-215ENST00000497148 743 ntTSL 4 BASIC15.11■□□□□ 0.01
LIG3P49916 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC15.11■□□□□ 0.01
LIG3P49916 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC15.11■□□□□ 0.01
LIG3P49916 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC15.11■□□□□ 0.01
LIG3P49916 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC15.11■□□□□ 0.01
LIG3P49916 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.11■□□□□ 0.01
LIG3P49916 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.11■□□□□ 0.01
LIG3P49916 AC010328.2-201ENST00000597698 1111 ntBASIC15.11■□□□□ 0.01
LIG3P49916 TECR-220ENST00000600083 1204 ntTSL 2 BASIC15.11■□□□□ 0.01
LIG3P49916 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 CETP-203ENST00000566128 1733 ntTSL 5 BASIC15.11■□□□□ 0.01
LIG3P49916 LINC02188-202ENST00000569740 3775 ntTSL 4 BASIC15.11■□□□□ 0.01
LIG3P49916 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIG3P49916 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.1■□□□□ 0.01
LIG3P49916 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC15.1■□□□□ 0.01
LIG3P49916 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.1■□□□□ 0.01
LIG3P49916 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
LIG3P49916 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
LIG3P49916 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC15.1■□□□□ 0.01
LIG3P49916 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
LIG3P49916 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC15.1■□□□□ 0.01
LIG3P49916 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC15.1■□□□□ 0.01
LIG3P49916 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
LIG3P49916 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 NTNG1-206ENST00000370071 3149 ntTSL 5 BASIC15.1■□□□□ 0.01
LIG3P49916 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.1■□□□□ 0.01
LIG3P49916 RPF1-202ENST00000370656 724 ntTSL 2 BASIC15.1■□□□□ 0.01
LIG3P49916 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
LIG3P49916 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
LIG3P49916 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC15.1■□□□□ 0.01
LIG3P49916 HNRNPA1P48-202ENST00000565308 961 ntBASIC15.1■□□□□ 0.01
LIG3P49916 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 REXO1L6P-201ENST00000603433 1515 ntBASIC15.1■□□□□ 0.01
LIG3P49916 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
LIG3P49916 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 VILL-201ENST00000283713 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 HOXA7-201ENST00000242159 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.1■□□□□ 0.01
LIG3P49916 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
LIG3P49916 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 AC012617.1-204ENST00000586340 2305 ntBASIC15.1■□□□□ 0.01
LIG3P49916 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 125.6 ms