Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC18.03■□□□□ 0.48
RXRBP28702 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC18.03■□□□□ 0.48
RXRBP28702 AADACL4-201ENST00000376221 1575 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
RXRBP28702 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC18.03■□□□□ 0.48
RXRBP28702 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 FAHD2A-204ENST00000447036 1366 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
RXRBP28702 AC005519.2-201ENST00000554532 1367 ntTSL 4 BASIC18.03■□□□□ 0.48
RXRBP28702 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.03■□□□□ 0.48
RXRBP28702 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 AC126365.1-201ENST00000578585 1514 ntBASIC18.03■□□□□ 0.48
RXRBP28702 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC18.03■□□□□ 0.48
RXRBP28702 SF1-209ENST00000433274 2317 ntTSL 2 BASIC18.03■□□□□ 0.48
RXRBP28702 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RXRBP28702 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
RXRBP28702 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
RXRBP28702 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RXRBP28702 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
RXRBP28702 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
RXRBP28702 APEX1-201ENST00000216714 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RXRBP28702 CTNNBL1-203ENST00000373473 1493 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RXRBP28702 CA6-205ENST00000480186 1493 ntTSL 2 BASIC18.02■□□□□ 0.48
RXRBP28702 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
RXRBP28702 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RXRBP28702 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RXRBP28702 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RXRBP28702 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RXRBP28702 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
RXRBP28702 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC18.02■□□□□ 0.48
RXRBP28702 LDHAL6FP-201ENST00000405916 1082 ntBASIC18.02■□□□□ 0.48
RXRBP28702 AC007622.1-201ENST00000488371 535 ntBASIC18.02■□□□□ 0.48
RXRBP28702 TMEM161B-AS1-204ENST00000504636 1039 ntTSL 2 BASIC18.02■□□□□ 0.48
RXRBP28702 ST3GAL1P1-201ENST00000513810 1014 ntBASIC18.02■□□□□ 0.48
RXRBP28702 AP003071.1-201ENST00000567925 622 ntTSL 3 BASIC18.02■□□□□ 0.48
RXRBP28702 MIR378I-201ENST00000582688 76 ntBASIC18.02■□□□□ 0.48
RXRBP28702 APOBEC3A-205ENST00000618553 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RXRBP28702 USP8-219ENST00000625664 1568 ntTSL 5 BASIC18.02■□□□□ 0.48
RXRBP28702 PUDPP2-202ENST00000628080 737 ntTSL 5 BASIC18.02■□□□□ 0.48
RXRBP28702 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
RXRBP28702 EPM2A-214ENST00000638783 801 ntTSL 5 BASIC18.02■□□□□ 0.48
RXRBP28702 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC18.02■□□□□ 0.48
RXRBP28702 EPM2A-229ENST00000640980 647 ntTSL 3 BASIC18.02■□□□□ 0.48
RXRBP28702 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
RXRBP28702 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
RXRBP28702 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
RXRBP28702 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
RXRBP28702 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
RXRBP28702 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC18.02■□□□□ 0.47
RXRBP28702 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC18.02■□□□□ 0.47
RXRBP28702 NDRG2-201ENST00000298684 1784 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
RXRBP28702 TUBD1-202ENST00000340993 1769 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
RXRBP28702 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC18.02■□□□□ 0.47
RXRBP28702 TRAPPC4-214ENST00000533632 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
RXRBP28702 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC18.01■□□□□ 0.47
RXRBP28702 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
RXRBP28702 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
RXRBP28702 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
RXRBP28702 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC18.01■□□□□ 0.47
RXRBP28702 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
RXRBP28702 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RXRBP28702 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC18.01■□□□□ 0.47
RXRBP28702 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RXRBP28702 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RXRBP28702 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RXRBP28702 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
RXRBP28702 RNASE8-201ENST00000308227 634 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
RXRBP28702 FATE1-201ENST00000370350 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RXRBP28702 MRPL23-203ENST00000397294 551 ntTSL 4 BASIC18.01■□□□□ 0.47
RXRBP28702 AL356653.1-201ENST00000402743 360 ntBASIC18.01■□□□□ 0.47
RXRBP28702 AC105446.1-201ENST00000441882 407 ntTSL 3 BASIC18.01■□□□□ 0.47
RXRBP28702 DNM1P17-201ENST00000512082 426 ntBASIC18.01■□□□□ 0.47
RXRBP28702 AC022217.2-201ENST00000518941 472 ntTSL 2 BASIC18.01■□□□□ 0.47
RXRBP28702 MRPL34-206ENST00000602206 603 ntTSL 3 BASIC18.01■□□□□ 0.47
RXRBP28702 AC091736.1-201ENST00000609370 305 ntBASIC18.01■□□□□ 0.47
RXRBP28702 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RXRBP28702 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
RXRBP28702 ARCN1-204ENST00000534182 1669 ntTSL 5 BASIC18.01■□□□□ 0.47
RXRBP28702 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RXRBP28702 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RXRBP28702 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RXRBP28702 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RXRBP28702 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
RXRBP28702 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RXRBP28702 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.01■□□□□ 0.47
RXRBP28702 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RXRBP28702 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RXRBP28702 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC18.01■□□□□ 0.47
RXRBP28702 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RXRBP28702 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
RXRBP28702 FAM27E3-201ENST00000418795 1593 ntTSL 1 (best) BASIC18■□□□□ 0.47
RXRBP28702 AL139158.3-201ENST00000641212 1562 ntBASIC18■□□□□ 0.47
RXRBP28702 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC18■□□□□ 0.47
RXRBP28702 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
RXRBP28702 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
RXRBP28702 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC18■□□□□ 0.47
RXRBP28702 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
RXRBP28702 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18■□□□□ 0.47
RXRBP28702 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
RXRBP28702 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18■□□□□ 0.47
RXRBP28702 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
RXRBP28702 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms