Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 SNX21-203ENST00000372541 771 ntTSL 2 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 MIR1202-201ENST00000408529 83 ntBASIC10.94□□□□□ -0.66
HLA-DMBP28068 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 BNIP3P42-201ENST00000454982 569 ntBASIC10.94□□□□□ -0.66
HLA-DMBP28068 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 RPL8-205ENST00000527914 551 ntTSL 3 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 RN7SL713P-201ENST00000582127 302 ntBASIC10.94□□□□□ -0.66
HLA-DMBP28068 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 KLK3-207ENST00000595952 969 ntTSL 3 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 BNIP3P29-201ENST00000598302 571 ntBASIC10.94□□□□□ -0.66
HLA-DMBP28068 AC104506.1-201ENST00000609247 429 ntBASIC10.94□□□□□ -0.66
HLA-DMBP28068 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 AC011447.5-201ENST00000616168 564 ntBASIC10.94□□□□□ -0.66
HLA-DMBP28068 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 GOLGA8IP-202ENST00000611635 2100 ntBASIC10.94□□□□□ -0.66
HLA-DMBP28068 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC10.94□□□□□ -0.66
HLA-DMBP28068 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HLA-DMBP28068 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 STX3-207ENST00000633708 3111 ntTSL 5 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 PCDHA5-203ENST00000614258 4248 ntBASIC10.93□□□□□ -0.66
HLA-DMBP28068 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 USP17L6P-201ENST00000382470 1197 ntBASIC10.93□□□□□ -0.66
HLA-DMBP28068 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 FAM21FP-201ENST00000426241 1131 ntBASIC10.93□□□□□ -0.66
HLA-DMBP28068 PTPA-215ENST00000432124 567 ntTSL 4 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 MFF-223ENST00000524634 647 ntTSL 2 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC10.93□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms