Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 REXO1L4P-201ENST00000605109 1937 ntBASIC15.37■□□□□ 0.05
LRCH3Q96II8 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 C18orf15-201ENST00000623680 2534 ntBASIC15.37■□□□□ 0.05
LRCH3Q96II8 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRCH3Q96II8 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRCH3Q96II8 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRCH3Q96II8 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRCH3Q96II8 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRCH3Q96II8 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRCH3Q96II8 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
LRCH3Q96II8 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 OR52M2P-201ENST00000414298 959 ntBASIC15.36■□□□□ 0.05
LRCH3Q96II8 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
LRCH3Q96II8 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
LRCH3Q96II8 FAM86JP-202ENST00000484500 988 ntBASIC15.36■□□□□ 0.05
LRCH3Q96II8 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 EEF1GP8-201ENST00000506566 1154 ntBASIC15.36■□□□□ 0.05
LRCH3Q96II8 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 MST1L-204ENST00000545160 559 ntTSL 4 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 VPS18-202ENST00000558474 873 ntTSL 3 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 AC022148.2-201ENST00000586176 560 ntBASIC15.36■□□□□ 0.05
LRCH3Q96II8 IFNL3P1-201ENST00000595082 501 ntBASIC15.36■□□□□ 0.05
LRCH3Q96II8 PCP2-202ENST00000598935 457 ntAPPRIS ALT2 TSL 3 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 AL451064.1-201ENST00000607718 471 ntBASIC15.36■□□□□ 0.05
LRCH3Q96II8 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC15.36■□□□□ 0.05
LRCH3Q96II8 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRCH3Q96II8 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRCH3Q96II8 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRCH3Q96II8 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRCH3Q96II8 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
LRCH3Q96II8 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRCH3Q96II8 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
LRCH3Q96II8 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
LRCH3Q96II8 CICP11-201ENST00000434745 2827 ntBASIC15.35■□□□□ 0.05
LRCH3Q96II8 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC15.35■□□□□ 0.05
LRCH3Q96II8 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 JTB-202ENST00000356648 1040 ntTSL 2 BASIC15.35■□□□□ 0.05
LRCH3Q96II8 MIR339-201ENST00000362153 94 ntBASIC15.35■□□□□ 0.05
LRCH3Q96II8 NAT8B-201ENST00000377712 765 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
LRCH3Q96II8 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC15.35■□□□□ 0.05
LRCH3Q96II8 RPL5P21-201ENST00000404620 815 ntBASIC15.35■□□□□ 0.05
LRCH3Q96II8 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 FTH1P18-201ENST00000412071 549 ntBASIC15.35■□□□□ 0.05
LRCH3Q96II8 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC15.35■□□□□ 0.05
LRCH3Q96II8 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC15.35■□□□□ 0.05
LRCH3Q96II8 RN7SL838P-201ENST00000481676 295 ntBASIC15.35■□□□□ 0.05
LRCH3Q96II8 CCNL2P1-201ENST00000512846 969 ntBASIC15.35■□□□□ 0.05
LRCH3Q96II8 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC15.35■□□□□ 0.05
LRCH3Q96II8 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC15.35■□□□□ 0.05
LRCH3Q96II8 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC15.35■□□□□ 0.05
LRCH3Q96II8 DLK1-205ENST00000556051 469 ntTSL 2 BASIC15.35■□□□□ 0.05
LRCH3Q96II8 CES1P2-201ENST00000566467 1242 ntBASIC15.35■□□□□ 0.05
LRCH3Q96II8 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC15.35■□□□□ 0.05
LRCH3Q96II8 AL359091.4-201ENST00000610052 409 ntBASIC15.35■□□□□ 0.05
LRCH3Q96II8 AC006213.5-201ENST00000619673 288 ntBASIC15.35■□□□□ 0.05
LRCH3Q96II8 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
LRCH3Q96II8 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC15.35■□□□□ 0.05
LRCH3Q96II8 RPL4P6-201ENST00000438116 1304 ntBASIC15.35■□□□□ 0.05
LRCH3Q96II8 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC15.35■□□□□ 0.05
LRCH3Q96II8 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRCH3Q96II8 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms