Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC13.87□□□□□ -0.19
PDX1P52945 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDX1P52945 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDX1P52945 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDX1P52945 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDX1P52945 AGGF1P1-201ENST00000509500 2073 ntBASIC13.87□□□□□ -0.19
PDX1P52945 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
PDX1P52945 AC027601.5-201ENST00000624065 2482 ntBASIC13.87□□□□□ -0.19
PDX1P52945 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PDX1P52945 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PDX1P52945 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDX1P52945 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDX1P52945 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDX1P52945 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
PDX1P52945 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC13.87□□□□□ -0.19
PDX1P52945 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PDX1P52945 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13.87□□□□□ -0.19
PDX1P52945 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC13.87□□□□□ -0.19
PDX1P52945 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDX1P52945 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.86□□□□□ -0.19
PDX1P52945 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC13.86□□□□□ -0.19
PDX1P52945 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC13.86□□□□□ -0.19
PDX1P52945 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
PDX1P52945 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC13.86□□□□□ -0.19
PDX1P52945 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC13.86□□□□□ -0.19
PDX1P52945 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.86□□□□□ -0.19
PDX1P52945 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC13.86□□□□□ -0.19
PDX1P52945 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
PDX1P52945 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 KRT17P5-201ENST00000332088 839 ntBASIC13.86□□□□□ -0.19
PDX1P52945 JTB-202ENST00000356648 1040 ntTSL 2 BASIC13.86□□□□□ -0.19
PDX1P52945 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
PDX1P52945 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC13.86□□□□□ -0.19
PDX1P52945 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC13.86□□□□□ -0.19
PDX1P52945 LYPLA2P1-203ENST00000447689 696 ntBASIC13.86□□□□□ -0.19
PDX1P52945 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC13.86□□□□□ -0.19
PDX1P52945 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC13.86□□□□□ -0.19
PDX1P52945 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC13.86□□□□□ -0.19
PDX1P52945 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 NEU3-207ENST00000534628 746 ntTSL 2 BASIC13.86□□□□□ -0.19
PDX1P52945 MIR6756-201ENST00000616240 63 ntBASIC13.86□□□□□ -0.19
PDX1P52945 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
PDX1P52945 AP002353.1-201ENST00000528257 1599 ntBASIC13.86□□□□□ -0.19
PDX1P52945 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
PDX1P52945 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC13.86□□□□□ -0.19
PDX1P52945 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
PDX1P52945 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
PDX1P52945 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
PDX1P52945 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC13.86□□□□□ -0.19
PDX1P52945 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDX1P52945 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.85□□□□□ -0.19
PDX1P52945 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.85□□□□□ -0.19
PDX1P52945 IL9RP3-201ENST00000442856 1674 ntBASIC13.85□□□□□ -0.19
PDX1P52945 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC13.85□□□□□ -0.19
PDX1P52945 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDX1P52945 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDX1P52945 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
PDX1P52945 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDX1P52945 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
PDX1P52945 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDX1P52945 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC13.85□□□□□ -0.19
PDX1P52945 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.85□□□□□ -0.19
PDX1P52945 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
PDX1P52945 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDX1P52945 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC13.85□□□□□ -0.19
PDX1P52945 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDX1P52945 GAS5-209ENST00000430245 723 ntTSL 3 BASIC13.85□□□□□ -0.19
PDX1P52945 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC13.85□□□□□ -0.19
PDX1P52945 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC13.85□□□□□ -0.19
PDX1P52945 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDX1P52945 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
PDX1P52945 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDX1P52945 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.85□□□□□ -0.19
PDX1P52945 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC13.85□□□□□ -0.19
PDX1P52945 MIR3180-2-201ENST00000581748 88 ntBASIC13.85□□□□□ -0.19
PDX1P52945 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDX1P52945 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
PDX1P52945 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
PDX1P52945 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
PDX1P52945 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDX1P52945 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms