Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC13.51□□□□□ -0.25
SOX3P41225 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
SOX3P41225 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
SOX3P41225 NPPA-201ENST00000376476 728 ntTSL 3 BASIC13.51□□□□□ -0.25
SOX3P41225 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC13.51□□□□□ -0.25
SOX3P41225 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 BCYRN1-201ENST00000418539 200 ntBASIC13.51□□□□□ -0.25
SOX3P41225 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.51□□□□□ -0.25
SOX3P41225 CALR4P-201ENST00000431943 946 ntBASIC13.51□□□□□ -0.25
SOX3P41225 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
SOX3P41225 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 HIST2H2BC-201ENST00000498492 580 ntBASIC13.51□□□□□ -0.25
SOX3P41225 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC13.51□□□□□ -0.25
SOX3P41225 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC13.51□□□□□ -0.25
SOX3P41225 ACTG1P17-201ENST00000558391 1119 ntBASIC13.51□□□□□ -0.25
SOX3P41225 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC13.51□□□□□ -0.25
SOX3P41225 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
SOX3P41225 AL136295.7-201ENST00000619226 1200 ntBASIC13.51□□□□□ -0.25
SOX3P41225 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 AL139099.5-201ENST00000635274 300 ntBASIC13.51□□□□□ -0.25
SOX3P41225 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
SOX3P41225 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC13.51□□□□□ -0.25
SOX3P41225 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
SOX3P41225 NUTM2HP-201ENST00000442076 2498 ntBASIC13.51□□□□□ -0.25
SOX3P41225 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.51□□□□□ -0.25
SOX3P41225 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
SOX3P41225 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC13.51□□□□□ -0.25
SOX3P41225 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC13.51□□□□□ -0.25
SOX3P41225 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC13.51□□□□□ -0.25
SOX3P41225 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC13.51□□□□□ -0.25
SOX3P41225 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC13.5□□□□□ -0.25
SOX3P41225 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
SOX3P41225 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
SOX3P41225 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 FAM90A12P-201ENST00000519497 2375 ntBASIC13.5□□□□□ -0.25
SOX3P41225 FAM90A24P-201ENST00000520792 2369 ntBASIC13.5□□□□□ -0.25
SOX3P41225 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
SOX3P41225 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.5□□□□□ -0.25
SOX3P41225 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.5□□□□□ -0.25
SOX3P41225 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
SOX3P41225 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 CRCP-204ENST00000398684 492 ntTSL 2 BASIC13.5□□□□□ -0.25
SOX3P41225 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.5□□□□□ -0.25
SOX3P41225 VDAC1P1-201ENST00000439229 848 ntBASIC13.5□□□□□ -0.25
SOX3P41225 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC13.5□□□□□ -0.25
SOX3P41225 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.5□□□□□ -0.25
SOX3P41225 SCARNA21-201ENST00000517026 139 ntBASIC13.5□□□□□ -0.25
SOX3P41225 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC13.5□□□□□ -0.25
SOX3P41225 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.5□□□□□ -0.25
SOX3P41225 AL160314.3-201ENST00000556041 767 ntBASIC13.5□□□□□ -0.25
SOX3P41225 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC13.5□□□□□ -0.25
SOX3P41225 CSH2-206ENST00000560142 749 ntTSL 5 BASIC13.5□□□□□ -0.25
SOX3P41225 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC13.5□□□□□ -0.25
SOX3P41225 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC13.5□□□□□ -0.25
SOX3P41225 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC13.5□□□□□ -0.25
SOX3P41225 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC13.5□□□□□ -0.25
SOX3P41225 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
SOX3P41225 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC13.5□□□□□ -0.25
SOX3P41225 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SOX3P41225 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC13.5□□□□□ -0.25
SOX3P41225 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.5□□□□□ -0.25
SOX3P41225 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.49□□□□□ -0.25
SOX3P41225 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX3P41225 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms