Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL5A1P20908 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.29
COL5A1P20908 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL5A1P20908 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
COL5A1P20908 RCC2P1-201ENST00000452257 1476 ntBASIC13.27□□□□□ -0.29
COL5A1P20908 AC024075.2-201ENST00000598112 1473 ntBASIC13.27□□□□□ -0.29
COL5A1P20908 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL5A1P20908 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC13.27□□□□□ -0.29
COL5A1P20908 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC13.27□□□□□ -0.29
COL5A1P20908 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL5A1P20908 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
COL5A1P20908 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL5A1P20908 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
COL5A1P20908 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC13.27□□□□□ -0.29
COL5A1P20908 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC13.27□□□□□ -0.29
COL5A1P20908 CTBP2P6-201ENST00000526402 1229 ntBASIC13.27□□□□□ -0.29
COL5A1P20908 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC13.27□□□□□ -0.29
COL5A1P20908 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC13.27□□□□□ -0.29
COL5A1P20908 AC016582.2-202ENST00000587765 1094 ntBASIC13.27□□□□□ -0.29
COL5A1P20908 CSTP2-201ENST00000610599 398 ntBASIC13.27□□□□□ -0.29
COL5A1P20908 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
COL5A1P20908 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL5A1P20908 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL5A1P20908 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL5A1P20908 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL5A1P20908 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL5A1P20908 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
COL5A1P20908 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL5A1P20908 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL5A1P20908 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC13.27□□□□□ -0.29
COL5A1P20908 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
COL5A1P20908 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
COL5A1P20908 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 HDGF-202ENST00000368206 960 ntTSL 5 BASIC13.26□□□□□ -0.29
COL5A1P20908 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC13.26□□□□□ -0.29
COL5A1P20908 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC13.26□□□□□ -0.29
COL5A1P20908 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC13.26□□□□□ -0.29
COL5A1P20908 HNRNPA1P10-201ENST00000444945 962 ntBASIC13.26□□□□□ -0.29
COL5A1P20908 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC13.26□□□□□ -0.29
COL5A1P20908 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC13.26□□□□□ -0.29
COL5A1P20908 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC13.26□□□□□ -0.29
COL5A1P20908 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC13.26□□□□□ -0.29
COL5A1P20908 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC13.26□□□□□ -0.29
COL5A1P20908 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC13.26□□□□□ -0.29
COL5A1P20908 AC048382.6-201ENST00000621980 1223 ntBASIC13.26□□□□□ -0.29
COL5A1P20908 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC13.26□□□□□ -0.29
COL5A1P20908 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC13.26□□□□□ -0.29
COL5A1P20908 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC13.26□□□□□ -0.29
COL5A1P20908 GUCY2EP-203ENST00000531117 1918 ntBASIC13.26□□□□□ -0.29
COL5A1P20908 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
COL5A1P20908 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 USP44-202ENST00000393091 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL5A1P20908 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC13.26□□□□□ -0.29
COL5A1P20908 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 KRT8P42-201ENST00000405771 1399 ntBASIC13.25□□□□□ -0.29
COL5A1P20908 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
COL5A1P20908 AC010900.1-201ENST00000449849 1296 ntBASIC13.25□□□□□ -0.29
COL5A1P20908 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC13.25□□□□□ -0.29
COL5A1P20908 AC099328.1-201ENST00000498809 1030 ntBASIC13.25□□□□□ -0.29
COL5A1P20908 AC147876.1-201ENST00000504408 322 ntBASIC13.25□□□□□ -0.29
COL5A1P20908 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC13.25□□□□□ -0.29
COL5A1P20908 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC13.25□□□□□ -0.29
COL5A1P20908 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC13.25□□□□□ -0.29
COL5A1P20908 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 PRR20FP-201ENST00000603320 180 ntBASIC13.25□□□□□ -0.29
COL5A1P20908 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
COL5A1P20908 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC13.25□□□□□ -0.29
COL5A1P20908 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC13.25□□□□□ -0.29
COL5A1P20908 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC13.25□□□□□ -0.29
COL5A1P20908 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL5A1P20908 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms