Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 JPT2-214ENST00000569765 782 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 AC027601.3-201ENST00000622907 509 ntBASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 CU634019.7-201ENST00000624153 1185 ntBASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 FP236241.2-201ENST00000624906 1185 ntBASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 MAP2K4P1-202ENST00000602584 2539 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 FAM90A11P-201ENST00000518378 2218 ntBASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC13.94□□□□□ -0.18
CCDC28BQ9BUN5 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 USP3-204ENST00000540797 5474 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 LILRB1-203ENST00000396317 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 ZNF568-206ENST00000455427 2378 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 CARS-214ENST00000529772 2637 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 BASP1P1-201ENST00000430708 665 ntBASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 AL138709.1-201ENST00000614840 1693 ntBASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 AOC4P-203ENST00000566825 2289 ntBASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 CCNI-201ENST00000237654 2772 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 MSNP1-201ENST00000511640 1732 ntBASIC13.93□□□□□ -0.18
CCDC28BQ9BUN5 SFTPA1-202ENST00000419470 2210 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 MEX3B-202ENST00000558133 4333 ntBASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms