Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 PLA2G2A-201ENST00000375111 970 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 TEX33-203ENST00000405091 1149 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 AC026884.1-201ENST00000418296 457 ntBASIC15.38■□□□□ 0.05
LRCH3Q96II8 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 FDPSP7-201ENST00000429043 1054 ntBASIC15.38■□□□□ 0.05
LRCH3Q96II8 CDKN2A-AS1-201ENST00000441769 823 ntBASIC15.38■□□□□ 0.05
LRCH3Q96II8 ZNF736P11Y-201ENST00000442535 1213 ntBASIC15.38■□□□□ 0.05
LRCH3Q96II8 ZNF736P12Y-201ENST00000443152 1243 ntBASIC15.38■□□□□ 0.05
LRCH3Q96II8 RNASEH2CP1-201ENST00000454281 502 ntBASIC15.38■□□□□ 0.05
LRCH3Q96II8 ZNF736P4Y-201ENST00000454995 1243 ntBASIC15.38■□□□□ 0.05
LRCH3Q96II8 AC022121.1-201ENST00000484584 579 ntBASIC15.38■□□□□ 0.05
LRCH3Q96II8 MAPK10-223ENST00000511167 1265 ntTSL 5 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 LINC02352-201ENST00000557928 468 ntTSL 5 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 AC006547.1-209ENST00000596334 996 ntTSL 5 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 AL512356.3-201ENST00000623005 461 ntBASIC15.38■□□□□ 0.05
LRCH3Q96II8 Z82244.2-201ENST00000632196 448 ntBASIC15.38■□□□□ 0.05
LRCH3Q96II8 BX322534.1-201ENST00000635574 241 ntBASIC15.38■□□□□ 0.05
LRCH3Q96II8 AC215524.1-201ENST00000635696 241 ntBASIC15.38■□□□□ 0.05
LRCH3Q96II8 AL590556.2-202ENST00000636906 844 ntBASIC15.38■□□□□ 0.05
LRCH3Q96II8 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 BRD7P5-201ENST00000299197 1822 ntBASIC15.38■□□□□ 0.05
LRCH3Q96II8 NORAD-201ENST00000565493 5339 ntBASIC15.38■□□□□ 0.05
LRCH3Q96II8 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 AC138761.6-201ENST00000583997 1423 ntBASIC15.37■□□□□ 0.05
LRCH3Q96II8 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 RPL18AP15-201ENST00000430258 517 ntBASIC15.37■□□□□ 0.05
LRCH3Q96II8 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 KRT19P4-201ENST00000443208 943 ntBASIC15.37■□□□□ 0.05
LRCH3Q96II8 AC007679.1-201ENST00000458609 502 ntBASIC15.37■□□□□ 0.05
LRCH3Q96II8 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 AC104629.1-201ENST00000494226 508 ntBASIC15.37■□□□□ 0.05
LRCH3Q96II8 AC022447.5-201ENST00000504817 392 ntBASIC15.37■□□□□ 0.05
LRCH3Q96II8 ABCC6P2-201ENST00000526069 590 ntBASIC15.37■□□□□ 0.05
LRCH3Q96II8 GLIPR1L2-203ENST00000547164 509 ntTSL 5 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 SNORD3B-1-201ENST00000577988 758 ntBASIC15.37■□□□□ 0.05
LRCH3Q96II8 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRCH3Q96II8 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
LRCH3Q96II8 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 249.3 ms