Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.16■□□□□ 0.02
LIG3P49916 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC15.16■□□□□ 0.02
LIG3P49916 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC15.16■□□□□ 0.02
LIG3P49916 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC15.16■□□□□ 0.02
LIG3P49916 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC15.16■□□□□ 0.02
LIG3P49916 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
LIG3P49916 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC15.16■□□□□ 0.02
LIG3P49916 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC15.16■□□□□ 0.02
LIG3P49916 DUX4L47-201ENST00000566374 394 ntBASIC15.16■□□□□ 0.02
LIG3P49916 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC15.16■□□□□ 0.02
LIG3P49916 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
LIG3P49916 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.16■□□□□ 0.02
LIG3P49916 AL603764.1-201ENST00000636452 321 ntBASIC15.16■□□□□ 0.02
LIG3P49916 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 AL137783.1-201ENST00000623494 1896 ntBASIC15.16■□□□□ 0.02
LIG3P49916 CALD1-205ENST00000422748 2665 ntTSL 2 BASIC15.16■□□□□ 0.02
LIG3P49916 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 AC111170.3-201ENST00000624282 2464 ntBASIC15.16■□□□□ 0.02
LIG3P49916 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
LIG3P49916 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
LIG3P49916 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC15.15■□□□□ 0.02
LIG3P49916 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIG3P49916 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
LIG3P49916 CICP1-201ENST00000416803 2410 ntBASIC15.15■□□□□ 0.02
LIG3P49916 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIG3P49916 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIG3P49916 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC15.15■□□□□ 0.02
LIG3P49916 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIG3P49916 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIG3P49916 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIG3P49916 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC15.15■□□□□ 0.02
LIG3P49916 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC15.15■□□□□ 0.02
LIG3P49916 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LIG3P49916 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIG3P49916 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIG3P49916 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
LIG3P49916 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC15.15■□□□□ 0.02
LIG3P49916 FAM21FP-201ENST00000426241 1131 ntBASIC15.15■□□□□ 0.02
LIG3P49916 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC15.15■□□□□ 0.02
LIG3P49916 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.15■□□□□ 0.02
LIG3P49916 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15.15■□□□□ 0.02
LIG3P49916 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC15.15■□□□□ 0.02
LIG3P49916 AC023310.1-201ENST00000554836 735 ntBASIC15.15■□□□□ 0.02
LIG3P49916 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC15.15■□□□□ 0.02
LIG3P49916 AC006453.4-201ENST00000636949 1252 ntBASIC15.15■□□□□ 0.02
LIG3P49916 AC008687.7-202ENST00000637404 953 ntBASIC15.15■□□□□ 0.02
LIG3P49916 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIG3P49916 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LIG3P49916 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LIG3P49916 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIG3P49916 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIG3P49916 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC15.15■□□□□ 0.02
LIG3P49916 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIG3P49916 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.15■□□□□ 0.02
LIG3P49916 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
LIG3P49916 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIG3P49916 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC15.15■□□□□ 0.02
LIG3P49916 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIG3P49916 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC15.15■□□□□ 0.02
LIG3P49916 AHCYP2-201ENST00000430630 1300 ntBASIC15.15■□□□□ 0.02
LIG3P49916 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC15.15■□□□□ 0.02
LIG3P49916 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
LIG3P49916 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC15.14■□□□□ 0.01
LIG3P49916 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 KCNMA1-287ENST00000640632 2808 ntTSL 2 BASIC15.14■□□□□ 0.01
LIG3P49916 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
LIG3P49916 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
LIG3P49916 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
LIG3P49916 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 MIR1202-201ENST00000408529 83 ntBASIC15.14■□□□□ 0.01
LIG3P49916 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.14■□□□□ 0.01
LIG3P49916 CD8B2-202ENST00000417670 633 ntBASIC15.14■□□□□ 0.01
LIG3P49916 AC245100.3-201ENST00000441281 285 ntBASIC15.14■□□□□ 0.01
LIG3P49916 YBX1P6-201ENST00000442962 1002 ntBASIC15.14■□□□□ 0.01
LIG3P49916 RNA5SP412-201ENST00000516234 123 ntBASIC15.14■□□□□ 0.01
LIG3P49916 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.14■□□□□ 0.01
LIG3P49916 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 AL583810.1-201ENST00000553344 1045 ntBASIC15.14■□□□□ 0.01
LIG3P49916 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC15.14■□□□□ 0.01
LIG3P49916 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.14■□□□□ 0.01
LIG3P49916 AL033527.4-201ENST00000641026 673 ntBASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 235.2 ms