Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC14.59□□□□□ -0.07
COL9A1P20849 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.59□□□□□ -0.07
COL9A1P20849 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL9A1P20849 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.59□□□□□ -0.07
COL9A1P20849 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC14.59□□□□□ -0.07
COL9A1P20849 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC14.59□□□□□ -0.07
COL9A1P20849 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL9A1P20849 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL9A1P20849 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.59□□□□□ -0.07
COL9A1P20849 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
COL9A1P20849 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL9A1P20849 AC006486.2-201ENST00000624246 2199 ntBASIC14.58□□□□□ -0.07
COL9A1P20849 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
COL9A1P20849 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC14.58□□□□□ -0.07
COL9A1P20849 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL9A1P20849 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC14.58□□□□□ -0.07
COL9A1P20849 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.58□□□□□ -0.07
COL9A1P20849 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL9A1P20849 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.58□□□□□ -0.07
COL9A1P20849 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL9A1P20849 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL9A1P20849 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL9A1P20849 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC14.58□□□□□ -0.08
COL9A1P20849 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
COL9A1P20849 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC14.58□□□□□ -0.08
COL9A1P20849 AC018442.1-201ENST00000421439 2061 ntBASIC14.58□□□□□ -0.08
COL9A1P20849 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC14.58□□□□□ -0.08
COL9A1P20849 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL9A1P20849 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL9A1P20849 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC14.58□□□□□ -0.08
COL9A1P20849 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.58□□□□□ -0.08
COL9A1P20849 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL9A1P20849 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.58□□□□□ -0.08
COL9A1P20849 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
COL9A1P20849 WDR54-202ENST00000409791 854 ntTSL 3 BASIC14.58□□□□□ -0.08
COL9A1P20849 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
COL9A1P20849 ATP6V1B1-AS1-201ENST00000422761 1129 ntTSL 2 BASIC14.58□□□□□ -0.08
COL9A1P20849 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL9A1P20849 ALMS1P1-201ENST00000428767 921 ntBASIC14.58□□□□□ -0.08
COL9A1P20849 OR4C14P-201ENST00000440929 923 ntBASIC14.58□□□□□ -0.08
COL9A1P20849 OR52X1P-201ENST00000446117 914 ntBASIC14.58□□□□□ -0.08
COL9A1P20849 DUX4L31-201ENST00000446466 1136 ntBASIC14.58□□□□□ -0.08
COL9A1P20849 AL157385.1-201ENST00000446973 268 ntBASIC14.58□□□□□ -0.08
COL9A1P20849 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL9A1P20849 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC14.58□□□□□ -0.08
COL9A1P20849 RN7SL788P-201ENST00000460504 316 ntBASIC14.58□□□□□ -0.08
COL9A1P20849 RANBP6-202ENST00000485372 1000 ntTSL 2 BASIC14.58□□□□□ -0.08
COL9A1P20849 PFN2-212ENST00000490975 858 ntTSL 4 BASIC14.58□□□□□ -0.08
COL9A1P20849 IMMP1L-215ENST00000534812 612 ntTSL 2 BASIC14.58□□□□□ -0.08
COL9A1P20849 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC14.58□□□□□ -0.08
COL9A1P20849 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC14.58□□□□□ -0.08
COL9A1P20849 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC14.58□□□□□ -0.08
COL9A1P20849 AL158050.2-201ENST00000605336 568 ntBASIC14.58□□□□□ -0.08
COL9A1P20849 AC005785.2-201ENST00000624655 631 ntBASIC14.58□□□□□ -0.08
COL9A1P20849 AC009145.4-201ENST00000625119 1294 ntBASIC14.58□□□□□ -0.08
COL9A1P20849 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.58□□□□□ -0.08
COL9A1P20849 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL9A1P20849 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL9A1P20849 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
COL9A1P20849 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL9A1P20849 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL9A1P20849 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
COL9A1P20849 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL9A1P20849 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.58□□□□□ -0.08
COL9A1P20849 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.58□□□□□ -0.08
COL9A1P20849 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC14.58□□□□□ -0.08
COL9A1P20849 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL9A1P20849 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
COL9A1P20849 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
COL9A1P20849 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC14.58□□□□□ -0.08
COL9A1P20849 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL9A1P20849 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC14.58□□□□□ -0.08
COL9A1P20849 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
COL9A1P20849 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL9A1P20849 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.57□□□□□ -0.08
COL9A1P20849 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 SPINK2-201ENST00000248701 613 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC14.57□□□□□ -0.08
COL9A1P20849 FDPSP7-201ENST00000429043 1054 ntBASIC14.57□□□□□ -0.08
COL9A1P20849 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC14.57□□□□□ -0.08
COL9A1P20849 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC14.57□□□□□ -0.08
COL9A1P20849 GALP-202ENST00000440823 889 ntTSL 5 BASIC14.57□□□□□ -0.08
COL9A1P20849 AC139143.1-201ENST00000441772 1207 ntBASIC14.57□□□□□ -0.08
COL9A1P20849 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC14.57□□□□□ -0.08
COL9A1P20849 KRT18P37-201ENST00000520711 1282 ntBASIC14.57□□□□□ -0.08
COL9A1P20849 DRG2-220ENST00000583355 891 ntTSL 3 BASIC14.57□□□□□ -0.08
COL9A1P20849 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC14.57□□□□□ -0.08
COL9A1P20849 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC14.57□□□□□ -0.08
COL9A1P20849 AL021368.1-201ENST00000607490 540 ntBASIC14.57□□□□□ -0.08
COL9A1P20849 AL021707.6-201ENST00000609212 491 ntBASIC14.57□□□□□ -0.08
COL9A1P20849 BX322562.1-201ENST00000617004 561 ntBASIC14.57□□□□□ -0.08
COL9A1P20849 C12orf45-205ENST00000622317 1078 ntTSL 5 BASIC14.57□□□□□ -0.08
COL9A1P20849 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms